Pseudochaenichthys georgianus (South Georgia icefish): 117454923
Help
Entry
117454923 CDS
T09629
Name
(RefSeq) AT-rich interactive domain-containing protein 1A-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117454923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117454923
03021 Transcription machinery [BR:
pgeo03021
]
117454923
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117454923
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
Helix-turn-helix
ARID
117454923
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117454923
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117454923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
117454923
NCBI-ProteinID:
XP_033950095
LinkDB
All DBs
Position
11:33180480..33290308
Genome browser
AA seq
1953 aa
AA seq
DB search
MEEDPTLTPSSSSSSSSSSSSKARQQVPVPSKEAPILGKDTDLRALRDIQWGCRTERLAL
WAACSTDNRCQVMVSRVPGATASRVRLTTLSTAPPPHPAQQQQQQPPYAGQPQGVSGAPY
PQQGHPSQASGQHGQPGAPYQQPQGPHGPPQGQPPYNQPPQTQPGQPNYVPPPQAQQGPG
PQSQQGPQGQPGYQQPPGAGQAPQQSPQQSPQQQQQPPQQQQQQQQQPPQQQQQQQQPGG
TPSQAQQPPGHGQQGQQAQQGQQAQQGQHSPYSQTPPLQQPPQQQQQSPYQRFPPPPQEL
SQDSFSSQSSAPPSNQPNKSSQEDSMQGRPSSLPDLSGSIDDLPTGTEGALSPGVSTSGV
SSSQGEQSNPAQSPFSPHTSPHLPGLRGPSPSPVGSPASVTPSRTGPLSPAAVPGNQMPP
RPPSVQSDSVMHSSPMNQSAMGQERVYMRNPQMPPYGSPGQPGSALSPRQSSGGQMHAGM
GPYPQNNSMGNYGPQGVQYGPQGYPRQPGYTGMPNANYPTGPGPDRILSGSMNPMPGQGG
GVPYGGIPPGRLGLGQMGPRPFGPGMAANMAGMPPQVASGMCPPPGMNRKDGGPSMHHGP
TNSIHNRPPGYPNMSQGMMGTGSPYGPGMNSMHGMMNQGGPGPYPMGTNIPNNSPGMPPS
TEFAMEKMNPAQKINNKVEGTPKPETTTTTPTPPTTTKKKSSSSTLTNEKITRLYELGPE
PERKMWVDRFLAFAEEKAMGMNNLPAVGRKPLDLFRLYVSVKEIGGLTQVNKNKKWRELS
TNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPADFFNTDSKKNPPKAQPPSPAGS
GSLQGPQTPQSTSSSMAEGGDLKPPTPASTPQLPPMPGARSSVSLQDPFADGGDPAFSRR
NALTPNSQGYQPGMGGPEMIARMGPYETNKDPFGGMRKAGEQFMQPGPNSGMGEQYNRGP
PGPMGNMQMGQRQQYPYGYDRRQEPGMGPEGSMGPGAPQPNMMPSGAETGMYSPSRPPPQ
QRHESYTNQYPGQGAPPGGPYPNQQPGMYPQQQPNYKRPVDGGYGPPAKRHEGEMYNYSG
QPGPQPSGPPGQQEMYNQYNAYPGGERRPPGPQNQFPFPFGRERVPSSSGPNSQSPMPPQ
MMASAMPSGPEGPQGPMWQGRNEMGYNYPNRQGAGQNPGYHGMNRSEEMMPGDQRMNHDG
GQWPGHQRQPPFGPGGSGPPMTRPLPSTYQTSQNHIPQGSSPTPMPRPMESRTSPSKSPY
MHPGIKVQKAGPPIPASHIGHAPVQQPMIRRDVAFPPGSVEASQPHLKPRRRLTVKEIGT
PEAWRVMMSLKSGLLAESTWALDTINILLYDDNSITTFNLCQLPGFLELVVEYFRRCLIE
IFGILKEYEVGDPGQRTLIDPNAAEDHVDENPITEEMDVDEEDEEDDEEEAEEVVVPSSL
VQVKLEEKQPSSEDEEEEKGSPVKEPVTSQNSDSEKPKQASKFDKLPLKVVRKRNPFLLN
LASLQRQSFDSGLTHWSIGGGDTTEHIQTHFESRSDLPKLRKRKPTTNSENRKKVGTRDE
SENTEKPPPILIPPVTATIDDVLFARPGSVTEEVVRGGAEEQKENGKYLFSINPEMRRNI
KILEDEPHSKDERPLSSLSDWQDSLSRRSICISNIVRSLSFVPGNDLEMSKHPGLLLLLG
RLVLLHHRHPERKQAPVTYEKEEEEDEGVSCERDEWWWDCLEVLRENCLVTLSNISGQLN
LSVYPESICLPLLDGLLHWAVCPSAEALDPFPTLGPLSSLSPQRLVLETLSKLSIQDSNV
DLILATPPFSRLEKLYGSLVRLVGERKVPVCREMAVVLLANLARGDSLAARAIAVQKASV
GNLLGFLEDSLAATQYQQQNQSSMMQTGHQYEPTSVDMMRRAARALHALAKVEENLSEFT
LFESRLLDVSVSPLMNSSVTQVICDVLFLIGQS
NT seq
5862 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggacccaacccttactcccagcagcagcagcagcagcagcagcagcagcagc
agcaaggcccgccagcaggtcccggtccccagcaaggaggctcctatcctgggcaaggat
acggacctccgggccctcagagatatccaatggggatgcagaaccgaacgcctggcgcta
tgggcggcatgcagtacggacaacagatgtcaggttatggtcagcagggtcccgggggct
acagccagcagggtcaggcttactacgctcagcacggcgccccccccccaccctgcccaa
caacagcagcagcagcctccgtacgcaggccagcctcagggcgtctctggagctccgtac
cctcaacagggacacccatcgcaggcctctggacaacacggacaaccaggagccccttac
caacaaccccaaggtccccatggccctcctcaaggtcaacctccctacaaccagcccccc
caaactcagcctggacagccaaactacgttcctcctccacaggctcaacagggaccagga
ccccagagtcaacagggtccacaaggtcaacctggctatcaacagcctcctggagcaggg
caagccccacagcagagcccacagcagagcccccaacaacaacaacagcccccacaacaa
caacaacaacagcaacaacagcccccacaacaacaacagcagcaacaacaaccaggagga
acaccgtctcaagcccagcaacctccagggcacgggcaacaggggcaacaggcgcaacag
gggcaacaggcgcaacaggggcaacattccccttattcccagactccccctcttcaacag
ccaccacaacaacaacaacagtctccatatcagaggttcccccctcctcctcaggagctt
tcccaggactcgttcagctctcagtcgagcgctcctccttccaaccagcccaataaaagc
agccaggaggacagcatgcaggggcggccctccagtctgccggatctttcgggctccata
gacgacctccccaccggcaccgagggggctctgagtccaggggtcagcacgtcgggtgtt
tccagcagtcagggagaacagagcaacccggcccagtctcccttctctccgcacacctct
cctcacctgccgggcctcagaggaccctccccctcgcctgtgggctcacctgccagcgtc
accccgtcccgaaccggacccctctcccccgctgccgtgccaggtaatcagatgccccca
cggccgcccagcgttcagtcagacagcgtcatgcactcctctcccatgaaccagtcggcc
atgggccaggaaagggtgtacatgcgtaaccctcagatgcctccgtacgggtccccggga
cagcctggctccgccttatctccacgccagtcttctggaggccagatgcatgctgggatg
ggaccatatccccagaacaactccatgggaaactacgggcctcagggggtccagtacggt
ccgcaaggttacccccggcagcccggatacacaggcatgcccaacgctaactaccccaca
ggtccggggcctgacagaattttgagcggctccatgaaccccatgcctggtcagggtggg
ggggtcccgtacggaggcatcccacccggtagattaggcctcggacagatgggtcctcgg
ccttttggccccgggatggcagcaaacatggccggcatgcctcctcaggtggcgtctggg
atgtgtccgcctccaggcatgaacaggaaggacggaggaccctcgatgcaccacggacca
acaaactccatacacaacaggccacctggatatcctaacatgtcccaaggcatgatggga
acaggatctccgtacgggccgggtatgaacagcatgcatgggatgatgaaccagggaggg
ccagggccgtatccaatgggaacaaacatacccaacaacagtcctggaatgcctcccagt
acggagtttgccatggagaaaatgaaccctgctcagaagatcaacaacaaagtggaaggg
actcccaagcccgaaacaacaacaacaacaccaacaccaccaacaacaacaaaaaagaag
tcgagctcttccaccctcactaacgaaaagatcacccgcctgtatgagctcggcccggag
ccggagcggaagatgtgggtcgatcgatttctggctttcgcggaggaaaaggcgatggga
atgaacaaccttcctgctgtgggacgcaaacctctggacctcttcagactctacgtgtcc
gtcaaagagatcggaggcctcacacaggtgaacaagaacaagaagtggagagagctgtct
accaacctgaacgtgggaacatcgagcagcgctgccagctcgctaaagaaacagtacatc
cagtgtttgtacgccttcgagtgcaagatcgagcgcggcgaagacccgccagcggacttt
ttcaacaccgactccaaaaagaacccgcccaaggcccagccccccagcccagctggctct
ggatccctgcagggcccccagactcctcagtccaccagcagctccatggcagagggggga
gacctgaagccccccacccccgcctccaccccccagctgcctccaatgcccggagccagg
agtagtgtgagtctgcaggacccttttgctgacggaggagaccccgctttctccaggaga
aacgcgctgacccccaattcacagggctatcaacccggcatggggggcccagagatgatt
gctcgaatgggcccctacgaaacaaacaaagacccctttggtggtatgaggaaagccgga
gagcagttcatgcagccggggcccaacagtgggatgggagagcagtataacagaggcccc
ccaggaccaatggggaacatgcagatgggccagagacaacagtacccttatggatatgac
agaagacaggagccaggcatgggccctgaaggcagcatgggccccggagcccctcagccc
aacatgatgccttcaggagccgaaactgggatgtactcgcccagccgccccccaccacag
caacggcatgagtcctacaccaatcagtatccaggccaaggagcgccccctggtggcccg
tatcccaatcagcagccaggaatgtatcctcagcagcagccgaactacaagcgtccagta
gacgggggttacggccctcctgcgaagcgccacgaaggggaaatgtacaactacagcggt
cagccgggcccccagccctcggggcccccgggccaacaggagatgtacaaccagtacaac
gcgtatcctggaggagaacgaagacccccaggtccccagaaccagttccctttccccttc
ggacgagagcgcgtcccctcgtcttcagggccaaactcccagtctcccatgcctcctcag
atgatggcgagcgccatgccatcgggccccgaaggcccccagggtcccatgtggcaggga
cgcaacgaaatgggttataattacccaaatcgacaaggagcgggtcaaaaccccgggtat
cacggcatgaatcgctcagaggaaatgatgccaggagaccagcggatgaatcacgatggt
ggtcagtggccgggtcatcagaggcagcctccttttggccccgggggctccggacccccc
atgacacgccccctaccgtccacctatcagacctctcagaaccacattcctcagggaagc
agtccaacgccaatgccacgacccatggagagtaggacgtcgccaagcaagtctccgtac
atgcacccgggcatcaaagtacagaaagcaggacccccgatacccgcctctcacattgga
cacgcccccgttcagcagccgatgatccggagagacgtggctttcccccccggatctgtg
gaagcatcgcagccacatctgaagccccgaaggagactcaccgtcaaagaaatcggcacc
cctgaggcctggagagtgatgatgtctctaaagtcaggattactggccgagagcacctgg
gctctggacaccatcaacatcctgctgtacgacgacaacagcatcactactttcaacctg
tgccagctgccgggcttcctggagctggtggtggaatatttcagacgctgcctcatcgag
atcttcggcatcttaaaggagtacgaagtgggcgaccccggccagcgaacgctcatcgac
ccaaacgccgccgaggaccacgtggacgaaaacccaatcaccgaggaaatggacgtggac
gaagaagacgaggaagacgacgaggaggaggcagaggaagtcgtcgttccctcgtcgctg
gttcaggttaagctggaggagaaacagccgtcttcagaggacgaggaagaggagaaaggg
tcacctgttaaagaacccgtcacttcgcagaactctgactcggaaaagccgaaacaggcg
agtaaattcgacaaactcccgctcaaagtggtgcgaaagagaaaccccttcctgctgaat
ctggcgtctttgcagaggcagagtttcgacagcggattgacccactggagcatcggcgga
ggagacacgacggagcacatccagacgcacttcgagagccggtcggacctcccgaagctg
cggaaacgcaaaccgacgacgaacagcgagaaccgcaagaaggtggggacgagagacgag
tcggaaaacacggagaaaccgccgcctattcttattcctcccgtcaccgccactatcgac
gacgtccttttcgctcggcctggatccgtcacggaagaagtggttcgaggaggcgccgaa
gagcagaaagaaaacgggaaatatctgttcagtattaaccccgaaatgcgacgcaacatc
aagatcctggaagacgagcctcacagcaaagacgaaaggccgctcagctccttgtccgac
tggcaggattcgctttctcgccgctccatctgcatctcgaacatcgtgcggagcctctct
ttcgtgccgggaaacgacctggagatgtcgaaacacccgggcctcctgctgctgctgggc
cgcctcgtgctgctgcaccacaggcaccccgagaggaagcaggcgcccgttacctacgaa
aaggaggaagaggaggatgaaggagtgagctgtgaacgggacgagtggtggtgggactgc
ctggaggttctgcgtgagaactgcctggtgacgctctccaacatctcgggccagctgaac
ctctcagtttacccagaaagcatctgtttgcctctgctggacggcctgctccattgggcc
gtctgtccgtcagccgaagctctcgatcccttcccgactttaggacccctcagctctctt
tccccgcagagactcgtcctggaaactctcagcaaactcagcatccaggacagcaacgtg
gatctcatcttggccacgcctcctttcagccgcctggagaaactgtacggatcgttggtt
cgcttagtcggcgagcgaaaagttcccgtgtgtcgagaaatggccgttgtgcttctggct
aacttggcgcggggagatagcttagcggcgcgggctatcgcggtgcagaaagccagcgtg
gggaatcttctgggtttcctggaggacagtctggccgccactcagtaccagcagcagaac
cagagctccatgatgcaaacgggtcatcagtacgagcccaccagcgtggacatgatgcgg
cgagcggcccgagcgctacacgccctcgcgaaggtggaggaaaacctctcggagttcact
ttattcgagtcgaggctactggacgtctccgtttcccccctcatgaactcctccgttacc
caggtgatctgtgacgtacttttcctgatcggacagtcatga
DBGET
integrated database retrieval system
