Pseudochaenichthys georgianus (South Georgia icefish): 117455062
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Entry
117455062 CDS
T09629
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117455062 (vps50)
Membrane trafficking [BR:
pgeo04131
]
Protein recycling
Others
EARP complex
117455062 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Kgd4-YMR31
OVT1
Motif
Other DBs
NCBI-GeneID:
117455062
NCBI-ProteinID:
XP_033950304
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All DBs
Position
11:22564731..22687261
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AA seq
961 aa
AA seq
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MQKIKSLMARQGLKSPQESMADLSPVENLRIPSKEELREVRELPIDPQAEQEMIDSIEEL
YYSNDSFDMVQHELEKLPSELNLQELEEYRDKLKKQQTSVSKKVADLILEKQPAYVKELE
RVTSLQTNLQLAAVICTNARRQLSVSKEEFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKNFDVSHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITMDSYIPCLTDLCKALWEVMVSYHRTMQWHEEHDKQDSSHTPAE
SDESVVDRSYVKKKLEHGLTRIWQDVQLKVKAYILGTDMSNFKYDDFIVVLDVISRLMQV
GEEFCSSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNISQLHE
FKFMGQCRSPSISPSRQAVSSSSPAQDELSLFQQFLQEGNPFELPTEKEEETEDVLASNG
YESDELEKNVYQDYDSDSDVPEELKQDYVDEQTGDAPLKSASRETIRSKKRSDYNLNKAN
APILTNTTLNVIRLVGKYMQMMSILKPIAFDVIHCVSQLFDYYLYAVYTFFGRNDMYESS
GLGLISSRLRTTLNRIQENLIDMEALGETSGVHGAAEDRKEKVPSPHLSQMVVLTNSGTL
YGLAQRVVATESLVFLAEQFESLQFQLDTMMPAAKKPFLQQFYSQTVSTASELRKPIYWI
VAAKAIDYEQMLLLMAGVKWDIREIMSQHNVYVDVLLKEFEQFNKRLEDVSRHVRIPLPV
SNVLWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDLRPIPDKEFV
ETYIKAYYLTENDMEQFIKNHREYSMKQLANLVNVCLGSHINKKARQKLLAAIDDIDRPK
R
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtctctcatggcccgacagggcctgaaaagtccccaggaaagcatg
gcagacctgagtcctgtggagaacctgaggatccccagcaaggaggagttgcgggaggtg
agggagctgcccatcgacccccaggcggagcaggagatgatcgacagcatcgaggagctg
tactactcaaacgactccttcgacatggtgcagcacgaactggagaaactaccctctgag
ctaaacctgcaggagctggaggagtacagagacaagctgaagaaacaacagacatcagta
tctaaaaaggttgccgatctcattctggagaaacagcctgcttatgtcaaggaactggag
cgagtgacatcgttgcagaccaacctgcagctggcagcggtcatttgcactaatgcaaga
aggcaactgagcgtctcgaaggaagaattcacagaagccagcctgggtcttttggccaat
cagaggaggcggcagctgctgacaggcctgctgaagtcactgaggaccatcaagacgctg
caaagaacagatgtgagactcagcgagatgcttgaggaggaagactatccaggtgcgatc
cagctctgtctggaatgtcaaaaggctgccagcaccttcaaacactacagctgcatcagc
gaattgaattccaaactacaagacactctggagcaaatagaggagcagcttgatgtcgcc
ctgtcgaagacttgtaagaactttgatgtttcgcactacaccaaggtccagctggcctac
actctcctgggaaagacacagactgctatggaccagctgcacatgcacttcacccaggcc
atccacaacacagtgttccaggtggtgctgggatacgtggagctgtgtgctggcaacgct
gataccaagttccagaagatgcagtataaagacctttgcacgcacatcaccatggacagc
tacattccctgcctgacggatctctgcaaggcattgtgggaggtgatggtgagctaccac
cgcaccatgcagtggcacgaggagcatgacaaacaggacagctcacacactccagcagag
tctgatgagtcggtggtggaccgcagctatgtcaagaagaagctggagcatggactgaca
cgcatctggcaggacgtccagttgaaagtgaaggcctatatcttggggacagacatgtct
aactttaaatacgatgatttcatcgtggtacttgatgtcatcagcaggttgatgcaggtg
ggggaggagttctgcagcagtaagtcagaggtcctgcaggagtctatcaaacgccagagt
gtcaactactttaaaaactatcacagggcacgactggaagagctgaggatgtttctggaa
aatgagacgtgggaactttgcccagtcaagtctaactttaacatctcccagctccatgag
tttaagttcatgggccagtgtcgttctccgtccatttccccgagcagacaggccgtttcc
tccagcagcccggctcaggacgagctgtccttgtttcagcagtttcttcaggagggaaac
ccctttgagctgcctactgaaaaagaggaggagacagaggacgtgctggcatccaacggg
tacgagtcggacgagctggagaagaacgtgtatcaagactacgacagcgacagtgatgtc
cctgaggagctcaagcaagactacgttgacgagcagacgggcgatgcccccctcaagagt
gcatccagagagaccataagaagcaagaaaaggtctgactacaaccttaataaggccaac
gcgccgatcctcacaaacaccaccctcaacgtcatccggcttgtcgggaagtatatgcag
atgatgagcattctgaagccgatcgccttcgatgtcatccactgtgtgtcgcagctcttt
gactactacctgtatgctgtttacaccttcttcggacggaatgacatgtatgagtcatcg
ggtctgggccttatcagcagcagactgagaaccacactgaaccggatccaggagaacctc
attgacatggaggcattgggggagacttcaggagtccatggagcagcggaggacaggaag
gagaaggtgcccagcccccacctcagccaaatggtggtcctcaccaacagtgggactctt
tatgggctcgcacagagagtggtggccactgaatctctggtgtttctggctgaacagttt
gaatcccttcagttccagctggacacgatgatgccggcagccaagaagcccttcctgcaa
cagttttactcccagacagtttctacagccagtgaacttcggaaaccaatttactggatt
gttgcggctaaggccatcgactatgaacaaatgttgctcctgatggctggagttaaatgg
gacattagggagatcatgtcccagcataatgtatacgtggacgtcctgttgaaggagttc
gagcagtttaacaaacgtctggaggatgtttccagacatgtacgcatccccctgcctgtg
tccaacgtcctgtgggagcactgcatccgcctggccaacaggactctagtagagggctat
gctaatgtgaagaaatgcagcaatgagggccgggctctgatgcagctcgacttccagcag
ttcctcatgaagctggagaagctgaccgacctgcgacccatccctgataaagagtttgtc
gagacctacatcaaggcctactacctgacggagaacgacatggagcagtttatcaagaac
cacagggagtactccatgaagcagctggccaacttggtgaacgtttgtctgggttcacac
attaacaagaaggctcgtcagaaactgctggccgccatcgatgacattgacagacccaag
agatag
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