Pseudochaenichthys georgianus (South Georgia icefish): 117455379
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Entry
117455379 CDS
T09629
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 1 isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04145
Phagosome
pgeo04814
Motor proteins
pgeo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117455379
09142 Cell motility
04814 Motor proteins
117455379
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117455379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117455379
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pgeo04812
]
117455379
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
117455379
Cytoskeleton proteins [BR:
pgeo04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
117455379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dynein_IC2
WD40_CDC20-Fz
WD40
Beta-prop_EML
WD40_Prp19
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_SPT8
Big_2
Motif
Other DBs
NCBI-GeneID:
117455379
NCBI-ProteinID:
XP_033950764
LinkDB
All DBs
Position
11:23073212..23128201
Genome browser
AA seq
653 aa
AA seq
DB search
MSDKSDLKAELERKKQRLAQIRQEKKIKEEERKKKEVRKKQSEIQQKRESIPEDSDLDRK
RRETEALLQSIGISPEPSLVPTPLSPSKSLSTPSETGSQDSTDGGAVGRFRSGFSKNKSQ
AQTSRTLQWDTDPSVLQLQADSELGRRMQRLGASKITQVDFLPKEMVAYCKETQTPLNSH
LSEVEEEEEDEEMMEAKPGPESEQQDEDDNRENKEGSFPVLREMTEEERQQTLHSSDFQS
FFDCSIRVMERALAEDGNIFFDYSGLDLEEKEGDLGSGSSLSFSRVFYDEHWSKHRVITC
LDWSPQYPELLVASYNNNEDAPHEPDGVALVWNMKFKKATPEYIYHCQSPVVSVGFAKFH
PNLVVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNANNLITVSTD
GRMCSWSLDMLSQPQETMELVYNKSKPVAVTGMAFPTGDVNNYVVGSEEGTVYTASRHGS
KAGICEMFEGHQGPVTGVSCHSAVGTVDFSHLFITSSFDWTVKLWSTKHNKPLYSFEDNA
DYVYDVMWSPVHPAVFAAVDGMGRLDLWNLNNDTEVPTASVTIEGASALNRVRWSSGGKE
VAVGDSEGRVWIYDTGELSVTHTDDWSRFARTLMEIRANRADGEEEGPMELDS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgtcggataaaagtgacctaaaagcagagctggagcgcaagaagcagcgcctcgcccaa
atcaggcaggaaaaaaagataaaggaggaggagaggaagaagaaagaggtaaggaaaaaa
cagtcagagatccagcagaagagagagtccatcccagaggattcagacctggaccgtaag
cgccgcgagactgaggccctactccagagtatcggcatctcacctgagccttcactagtc
ccgacccctctgtccccctccaaatcactgagcacccccagtgagacgggaagccaggat
tcaactgatggaggagcagtgggcaggtttaggtcaggtttctctaaaaacaagtcccaa
gcacagacttcaaggacgctgcagtgggacacagacccgtctgtgctgcagctgcaggct
gattctgagctcgggcgcaggatgcagagactgggagcctctaagatcacacaggtagac
ttccttcccaaagagatggtcgcttactgcaaggagacacaaacgcctctcaactcccac
ctgtctgaagtagaggaggaagaggaagatgaggagatgatggaggcaaagccaggccct
gagtcggagcaacaggatgaagatgacaacagagaaaacaaagaaggctcctttccagtt
ctgagggagatgacggaggaggagaggcagcagaccctgcactcttcagactttcagagt
ttcttcgactgcagcatccgggtgatggagagagctctggccgaagacggaaacatcttc
ttcgactacagcggcctggacctggaggagaaggagggagacttgggtagcggctccagt
ctgtccttcagccgagttttctacgatgaacactggtccaaacatcgcgtgatcacctgc
ctcgactggtcccctcagtatccagagctgctggtcgcctcgtacaacaataatgaggat
gctcctcatgaaccggatggtgttgctttagtatggaacatgaaatttaagaaggccaca
cctgagtacatctatcactgtcagtctcctgtagtatctgtgggctttgccaagtttcat
cccaacctggtggtgggggggacttactcgggacagatcgtcctgtgggacaaccgcagt
caccgccggacccccgtccagaggacccctctgtctgctgctgctcacactcacccagtg
tactgcgtgaacgtggtcggtacccaaaatgccaacaacctgatcactgtgtctacagac
ggcaggatgtgctcctggagtctggatatgctctcccagccacaggagaccatggaactg
gtgtacaataaatccaaacctgtggcggtgacaggcatggcgttccccacgggagacgtt
aacaactatgtggtcgggagtgaggagggcactgtgtacactgcatccaggcatggcagc
aaagcggggatctgtgagatgttcgagggccaccaggggccggtgacgggcgtcagctgc
cacagcgcagtgggcaccgtcgacttctctcatctcttcatcacatcctccttcgactgg
accgtcaaactctggagcaccaagcacaacaagcctttgtactcgtttgaggacaacgcc
gactatgtgtacgacgtcatgtggtcgcccgtgcaccccgccgtgttcgccgccgtggat
ggcatgggccgcttggacctgtggaacctcaacaacgacactgaggtccccactgccagt
gtgaccattgagggcgcttcagccctgaacagagtgcgctggtcgtcgggggggaaggag
gtggccgtgggcgactcagagggcagggtctggatctatgatactggagagctgtcagtg
actcacaccgatgattggtcgcgcttcgctcggacgctgatggagatccgtgccaaccgg
gcggacggcgaggaggaggggcctatggagctggattcatag
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