Pseudochaenichthys georgianus (South Georgia icefish): 117455408
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Entry
117455408 CDS
T09629
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
pgeo04518
Integrin signaling
pgeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117455408 (col9a2)
04518 Integrin signaling
117455408 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117455408 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117455408 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pgeo00535
]
117455408 (col9a2)
Proteoglycans [BR:
pgeo00535
]
Extracellular matrix (ECM) proteoglycans
Others
117455408 (col9a2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117455408
NCBI-ProteinID:
XP_033950813
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Position
11:26733484..26752645
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AA seq
691 aa
AA seq
DB search
MAALSALLKTWVILQTLCLALAQVRGPPGPQGQGGPPGPSGTPGSDGLDGEKGPPGTPGP
LGLKGEPGEPGLDGAPGENGIDGLIGAKGDRGPFGNPGPKGQSGPTGEPGLPGPGLPGLA
GAPGPIGLPGEIGINGPKGGMGSSGASGLPGPPGKPGSPGKFIGGEEGSADFQCPLNCLA
GVKGPQGLQGIKGHKGRAGVLGEPGSIGKSGPRGEIGISGEQGIPGPPGPLGLRGYPGMM
GPKGEAGPRGYKGINGPVGIPGPPGEEGPKGPPGEAGGKGDKGSRGITGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGGPGLAGRPGAPGPQGNAGLPGGPGTKGGPGGKGESGPRGHV
GMQGTSGPLGEPGVPGEAGMEGVPGPKGDRGQRGAVGPQGVVGKPGGQGERGPMGVPGAQ
GLGGTKGDKGFQGKGGSKGDDGDPGVEGLAGENGDKGMSGEPGPKGQQGIMGETGHNGPT
GDPGKLGDVGPTGLPGPRGLNGERGVPGMSGISGTAGRDASDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGAPGAPGPPGSPGSQGQHGLPGSRGIPGMFGGPGQVGNTGLKGKR
GLKGERGDPGKPHPGAPGPPGIPGPSGVDGVARDGRHGERGPQGSAGEAGYPGKAGAGGL
PGFCEAAMCLAASAYTSPRLQEAGRIKGPNI
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctctgccttgctgaagacctgggtcattctgcagaccctgtgcctggct
ctggcccaagtgaggggtccacctggacctcagggccagggcggcccaccaggcccctcc
ggcacccccgggtcagacggcttggatggagaaaaaggacctcctgggacccctggtcca
cttggactgaagggagagccaggagagccaggtctcgatggagcgccaggagagaacggc
attgatggtctgattggagcaaagggggatcgcggtccttttggaaaccctggcccgaag
ggtcaatctggacccactggggaacctggtcttcctggacccggccttccaggattggct
ggcgctccagggccaattggtcttccaggggaaattggaataaatggaccaaagggtggc
atgggatcatccggagcttctggacttcctggacctcctggcaagccagggtctccaggg
aagttcatcggtggagaggagggaagtgccgacttccagtgccctcttaactgtctggct
ggagttaaaggcccccagggactgcagggaatcaagggacacaaaggacgtgccggagtt
ctcggagagcctggcagcattggaaaatcgggtcccaggggagaaattggcatctctggg
gagcaaggcatccctggacctccgggtccgctgggcctgagaggttatccaggaatgatg
ggtcctaaaggggaagcagggccccgcggctacaagggcatcaacggacctgtaggaatt
cccgggcctcctggtgaggaaggacccaagggaccacccggagaggcaggcggcaaggga
gacaaaggcagccgaggtatcacgggcccacagggtgcggttggcaagaagggagagaat
ggtctgccgggcattgacggaaaggatggcacacctggtattcctggaatcaagggcggc
cctggcctggctgggaggcctggtgctcccggtcctcaggggaatgcgggattacccggc
ggcccagggacaaaaggaggacctggagggaagggcgagtctggacctcggggccacgtt
ggcatgcaaggcacctcaggacctctgggtgagcctggtgttcctggcgaggctggtatg
gaaggcgttcccggacccaagggcgacagaggccagcggggagcagtgggtccacaggga
gtagtcggcaagcctggaggacaaggagagagaggaccaatgggtgttcccggtgcgcag
ggtctcggtggaaccaagggagacaagggtttccaaggaaaaggcgggtcaaagggagac
gatggtgaccccggtgttgagggattggctggcgagaatggtgataagggtatgtctggt
gaacccgggcccaaaggacagcaaggaatcatgggtgaaacgggacacaatggacccact
ggagaccccggtaaacttggagacgtgggccccacaggactgcccggccccaggggactg
aacggagagcgaggagtacccggcatgtccggcatttcagggacagcgggccgcgatgca
tcagaccagcatattatcgaggtggtgctgaagatgttgcaggagaggctagctgctgtg
gcggtgagcgccaagagggcggtgctgggtggagccggtgtgatgggagcccccggcgcc
cctggaccccctggatcacctggtagtcaggggcaacatggcttacctggatcccgcggc
attcccgggatgttcggagggcctggacaggtcggaaacaccggacttaaaggaaagaga
ggacttaagggagaaagaggagatcctggtaaaccccatccaggagcaccaggaccccca
gggataccaggtccttctggtgttgatggtgtggctcgggacggtaggcacggtgagcga
ggaccccagggatcagccggagaggcggggtaccccggtaaggcgggtgcagggggtctc
ccagggttctgcgaggcggccatgtgcctcgctgcgtcggcgtacacctcccccagacta
caggaggcgggccgcatcaaaggacccaacatttag
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