Pseudochaenichthys georgianus (South Georgia icefish): 117455458
Help
Entry
117455458 CDS
T09629
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pgeo00535
]
117455458
Proteoglycans [BR:
pgeo00535
]
Extracellular matrix (ECM) proteoglycans
Others
117455458
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Fn3_VIN3
Pur_ac_phosph_N
Fn3_ROS1
Fn3_PBP1
Interfer-bind
VWA_3
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
117455458
NCBI-ProteinID:
XP_033950868
LinkDB
All DBs
Position
11:complement(4746608..4983127)
Genome browser
AA seq
1869 aa
AA seq
DB search
MHFSVGLSLCLLGFALVSLFPQPARGQVSSPRRFRAKIQSPTKLHVSWKEPKGQFDGYKV
LYTTEPGGEQKDTEVLKQEAKLLIEDYDPSKEYHFKIIAVSGGQQSKPLQAKHEAQQSGV
AMVQSQKRQDSGTREENNEISEADEEFMCKTPARADIVILVDGSWSIGRINFRLVRNFLE
NLVKAFSVEFDKTRIGLAQYSGDPRIEWHLNTHTTKASVIDAVKNLPYKGGNTLTGLALT
FMLENSFKPESGSRPGVPKIGILITDGKSQDDVIPPAQSLREAGIELFAIGVKNADENEL
KAIASPPEDTHVYNVADFSVMSDIVEGLTKTVCDRVDVLDKTLKVGREPDPQPTSVEPPR
DLVTSDITARTFRVRWTHASGQVEKYRVVYYPASGGQPEEKVVQGTENSVQLNYLNSLTE
YQVAVFAVYRSSASEALRGSATTLALPMVNDLELFDITHSTMMVRWQIAAGASGYMILYA
PLTEGNHEDEKEVKVEDSVNEVELEELSPATEYTVTVYALYGEEASDPMTSQQTTLPLTP
ARNLRFSDVDHRSARLTWDSASRKANGYRVMYVKTTGAQTTEVDVGRVTTWLLGNLTSLT
EYTVGVFAIYDEGQAEAVTDSFTTETVPDPLDLKSTDISTDSFRVFWKHPASDVMLYRLT
WTSTDGGDSEEVLIDGKMNTYLIQGLTPLTDYEVLLTAIYKNEVESDEVVLVESTVEILT
TIATTTTTTATPRYGVRNMRIDEETTYSMRVAWQPVDSRNVRHYRLSYISAKGDRAEETR
TVPTGQTSLVLQPLLSDTEYKIAITPVYPEGEGPAAARMGRTLPLSAPKNLRVSEEWYNR
FRISWDVPPSPTMGYRVVYQPISAPGPALETFVGEDVNTMLIVNLLSGTEYSVKVIASYT
TGSSEALSGRAKTLHLGVTNLSAYQVRMTSFCGQWQAHRHASSYRVVMESLLNGQKQEAK
LSGGANRHCLNNLKANTQYKMSVYAQMQDGTEGPAVTITERTLPIPTPAPTTPPSTTPLP
TIPPAKEVCKAAKADLVFLVDGSWSIGDENFLKIIRFLYSTTGALDRIGPDGTQVAIAQF
SDDARTEFKLNSYGDKERLLDAINKISYKGGNTKTGRAIQHVKDNIFTTEGGVRRGIPNV
LVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPIDRHVFFVDDLDA
FAKIEEKLVTFVCEAATATCPSVPMSGSITPGFRMMELFGLVENRYSSVPGVSMVPGTFN
TFPSFHLHSDAFLAQPTRFIHPEGLPSDYTITLLFRLLPNTPEEPFALWEILNKNNEPLV
GVIMDNGGKTLTFFNNDYKGEFQTVTFEGPEIKKLFYGSFHKLHIAVGKTSARVVIDCSA
VAEKSINAAGNITIDGLEVLGRMVRSRGNKDNSAPFQLQLFDIVCSTSWAGRDKCCELPG
LRKEVDCPAMPKACTCTQDSKGPPGPTGPPGGPGTRGARGDRGEPGPVGPGGPVGDTGLP
GPQGSQGPQGPSGRSIMGGPGAPGEGGQKGEAGPQGTQGVSGRPGAPGREGPAGVRGLLG
KDGSQGRQGPSGTTGTPGAPGSQGNPGSSGKMGELGPPGLLGGKGEKGERGDLQSTASVQ
TIARTVCEQLIESHMARYNSILNQAPSPSVSIRTVAGAPGEPGRQGTPGTQGEQGPSGRP
GFPGQNGQNGQPGERGQQGEKAEKGSPGVGVQGPRGPPGPPGTPGQGRTGSQGTSGRPGN
PGTGGRPGVPGPVGSAGPPGYCDQNSCMGYNVGEGEYVTDQGPVPAVQLPPNVFQNYEAE
EDDPYRYYEPSYPAPRPVARDDPSLALEGMDMRSPGVHRSSRSVEGGRRERGPRRKXKRA
AKPPPGLSK
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atgcatttctcagtcggactgagtctctgcctgctaggcttcgctcttgtctctctgttt
cctcagccagcgcggggtcaagtttcatcgccacggagatttcgtgccaaaattcagagt
cccaccaagctgcatgtgtcgtggaaagagcccaaaggacagtttgacggctacaaggtc
ctttacaccacagagccaggtggagagcagaaggacactgaggtattgaagcaggaagca
aagctgctcattgaggactacgacccctccaaagaataccactttaagatcattgctgtg
agtggaggacagcagagtaaacctctccaggccaaacatgaagctcagcaatccggcgtt
gcgatggttcaatctcagaaaagacaagacagcgggacccgagaggaaaacaacgagatc
tccgaagctgacgaggagtttatgtgtaagactccagccagagccgacattgttattctg
gtggacggctcctggagtatcggccgcatcaacttcaggctggtcaggaatttcctggaa
aacctggtcaaggccttctcggtggagtttgacaagaccaggatcggcctggctcagtac
agtggagaccccaggatcgagtggcacctcaacactcacaccaccaaggcgtctgtgatc
gatgctgtgaagaacctgccatacaagggagggaacacactgacaggcctggctctgacc
ttcatgctggagaacagcttcaaacccgagtctggatccaggcccggtgttcccaagata
ggaattctcatcaccgacgggaagtcccaggacgatgtgatcccccccgcacagagcctg
agggaggcggggatcgagctgtttgccattggtgtgaagaacgctgatgagaacgagctg
aaggccatcgcctctcctcccgaggacactcacgtctacaatgtggcggacttcagcgtg
atgagcgacatcgtggagggcctcaccaagacggtgtgcgaccgagtggatgtgctggac
aagacgctcaaagtgggaagagaaccggacccccagcccacctctgtggagccgccccgc
gacctggtgacatcagacatcactgcccgcaccttccgggtgaggtggacgcacgcgtcg
ggccaggtggagaaataccgcgtggtctactacccagccagcggaggacagccggaagag
aaagtggtgcaggggacggagaacagtgtgcagctgaactacctgaactctctgacggag
taccaggtggctgtttttgccgtctaccgcagctcggccagcgaggccctgagaggaagt
gctactacattggccctgcccatggtgaacgacctggagctgtttgatatcactcacagc
accatgatggtccgctggcagattgccgccggggcttctgggtacatgatcctctacgcc
ccgctgactgagggaaaccatgaagacgagaaggaggtgaaggttgaggattcggtgaac
gaggtggagctagaagagctgagccctgccacagagtacactgtgacggtgtacgccttg
tacggagaagaggccagcgaccccatgaccagccagcagacaacattaccgctgaccccg
gcgaggaacctgcgcttctcagacgtggaccaccgctccgcgcgcctcacatgggactcc
gcctccaggaaggccaatggttaccgcgtcatgtacgtcaagaccaccggagcccagacc
actgaggtggatgttggccgtgtgacaacctggttgctaggaaacctgacgtccctgacg
gagtacactgttggtgtctttgccatctacgacgagggacaagctgaggctgtgactgac
agcttcaccacagagaccgtcccggaccccctggacctgaagagcaccgacatctccacg
gacagcttccgggtgttttggaaacaccccgcctctgatgtcatgctgtaccgactcacc
tggacatccacagatggaggagacagtgaagaggttctgatcgacggaaagatgaacacc
tacctgatacaaggactcacccccctcacagactacgaggtcctgcttactgcgatctat
aagaacgaggtggagagtgacgaggtggtcctcgtagagtccaccgttgaaatattgacc
accattgccacgacgaccaccaccacagcaactcctcgttacggcgtgcggaacatgagg
atcgatgaggaaaccacgtacagtatgcgcgtggcctggcagcctgtggactcgaggaat
gttcgacattatcggctgagctacatcagtgccaagggagaccgggcagaggagacgagg
acggtgcccacaggtcagaccagcctggttttgcagcccctgctgtcggacacagagtac
aaaatcgccatcactcctgtataccctgaaggagagggaccagcagcggcgcggatggga
cggacacttcccctctcggctccgaagaacctgcgtgtgtcggaggaatggtacaaccgc
ttcaggatcagctgggatgtccccccttcccccaccatgggctacagggtggtctaccag
cccatatctgctccgggccccgctctggagacgttcgtgggggaggacgtgaacaccatg
ctgatcgtcaacctgctgagtgggacggagtacagcgtgaaggtcatcgcctcctacacc
acaggatccagtgaggccctttcagggcgggccaagaccttgcacctgggggtgaccaac
ctgagtgcgtaccaggtgaggatgaccagtttctgtggccagtggcaggctcaccgacac
gccagctcctacagagtggtcatggagtctctgctcaacggtcagaagcaggaggcgaag
ctgagcggaggcgccaacagacactgtttgaacaacctgaaggccaacacgcagtacaag
atgagtgtgtacgctcagatgcaggatggcactgaagggcccgcggtcaccatcaccgag
agaacactgcccatcccaaccccagcaccaaccacgccccccagcaccacaccgttaccc
acaatcccccctgccaaggaagtctgcaaggcagccaaagcagacctggtgttcctggtc
gacggctcctggagtatcggggatgaaaacttcctgaagatcatccgcttcctgtacagc
accaccggagctctggaccggatcggccccgatggaactcaggtggccatcgctcagttc
agtgacgacgccaggacagagttcaaactgaactcgtacggcgacaaggagcgactgctg
gacgccatcaacaagatctcctacaagggagggaacaccaagacagggcgcgccatccaa
cacgtgaaggacaacatcttcacgacagaggggggagtcaggagggggatccccaacgtg
ctggtggtcctcaccgacggtcgatctcaggatgacgtcaacaaggtttcaaaggagatg
cagatggaaggctacatcgtgtttgcgattggcttcgctgacgctgactacggggagctg
gtgagcatcgccagtaaacccatcgacagacacgtgttcttcgtggacgacctggacgcc
ttcgccaagatcgaggagaagctggtgaccttcgtgtgtgaggccgccactgccacgtgt
ccatcagtaccgatgagtggcagcatcacaccaggtttccgtatgatggagctctttggg
ctggtggagaataggtacagcagtgtccctggcgtttccatggtacctggcaccttcaac
accttccccagtttccacctgcacagcgacgccttcctggcacagcccaccaggttcatc
caccctgaagggctgccctcagactacaccatcaccctgctgttcaggctgctgcccaac
actccagaggagcccttcgccctctgggagatcctcaacaagaacaacgagccgctggtg
ggagtcatcatggacaatggaggaaagactctgacattcttcaacaacgactacaaagga
gagttccagacggtcaccttcgaagggcccgaaataaagaaactcttctacggcagcttc
cacaagcttcacattgccgtcggcaagacgagcgccagagtggtgatcgactgcagcgcg
gtggctgagaagagcatcaacgcggcggggaacatcaccatcgacgggctggaggttctg
ggcaggatggtgcgctcccgaggcaacaaggacaactctgcaccgttccagctgcagctc
ttcgacatcgtctgcagcacctcgtgggccggcagagacaagtgctgcgaacttcctggt
ctgagaaaggaggtggactgccccgccatgcccaaagcctgcacctgcacccaggacagc
aaaggcccccccggccctactggacccccaggaggccctggaaccagaggagcccgaggt
gaccgcggagagccaggccccgtgggaccaggtggtccagtcggggacacaggtttacca
ggacctcaggggtcccaaggaccacagggaccgagtggacgctccatcatggggggccca
ggcgctccaggagagggaggacagaaaggtgaagctggaccacaaggaacacagggagtg
tctggcagacctggagctccaggccgagagggacctgcgggagtcagaggcctgctgggc
aaggacggctcccagggcagacagggcccctcaggaaccactgggacgccaggagccccg
gggtcccagggtaaccccggctcttcagggaaaatgggagaactgggccccccgggtctt
ctgggaggcaagggggagaagggtgaacggggagacctccagtccacagcttcagttcag
accatcgccaggacggtctgtgagcagctcattgagagccacatggctcgctacaactcc
atcctgaaccaggcgcccagtccatcagtgtccatccgcacggtggcaggagcccccgga
gagcctggccgacaggggaccccagggactcagggagagcaggggccctcaggaagaccc
ggcttcccagggcagaacggacagaacgggcagccaggagagagaggtcaacaaggagaa
aaggcggagaaagggtctccaggcgttggagtccaaggccccagaggacccccaggcccc
cccggaaccccggggcagggcagaactggcagccagggcacctcaggcagacctggaaat
cctggaactggtgggcggcccggggtcccagggcccgtcggctccgctgggcccccgggg
tactgcgaccagaactcctgcatgggctataacgttggagagggtgaatatgtcactgac
cagggccctgtccccgcagtccaactgccgcccaacgtcttccagaactacgaggcggag
gaggacgacccgtaccggtactacgagcccagctacccggcccctaggcctgttgcccgc
gacgacccctcgctcgccctggagggcatggatatgagatcccccggagtccaccgcagc
tcccggagcgtggagggggggaggagagagagagggcccaggaggaaancaaaaagagca
gcgaagccgccgcctggactaagtaaatga
DBGET
integrated database retrieval system
