Pseudochaenichthys georgianus (South Georgia icefish): 117455575
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Entry
117455575 CDS
T09629
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117455575 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117455575 (skic2)
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117455575 (skic2)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117455575 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
117455575 (skic2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
Motif
Other DBs
NCBI-GeneID:
117455575
NCBI-ProteinID:
XP_033951024
LinkDB
All DBs
Position
11:complement(16341535..16359694)
Genome browser
AA seq
1244 aa
AA seq
DB search
MDRINVPPAGPMDLRLSLLEMGCSGRFELITHPVPDQPLAPQSTLPHGLPPTCLSLETEV
EKQFLRDAAWLPIHDTDFAFQKFLKVTQREVNVNSLIHCSPSALHSGVSVVRDPTTGMLL
DFTEVLLENTSLSAKNSLSFQRQPGPPAESLRGSNTNYPFLPGGMEELTLEQIKKKSELE
EEIDFENDLLRVPPGLKAGMDFTDKEAKIAKAEVNLMSLLSTLDITDLQPEAEEKEESKG
SEEAPKLPRTNSLEDLGVKDVVSSPAPSEKGNNDKSKPKENPEENKKWAIPVNISAPCDD
FYKRIPNPAFKWPFELDVFQKQAVLLLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTR
TIYTSPIKALSNQKFRDFKQTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVIR
DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKKHI
YVISTMKRPVPLEHYLYTGNSTKTQKEMFLLVDPTGNFLTKGYYAAIDAKKERTSKHAQS
FGAKGTSHNTSASQDRSVWLTLLHFLSQRQQTPVVAFTFSRTRCDDNARSLDSMDMTTSI
EKAEIHSFFQKSVSRLRGADRQLPQILLMRDLLKRGVAVHHSGILPILKEVIEMLFSRGL
VKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTV
IILCKAGVHEMGDLHVMMLGKPTTLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSENHR
DTQASESRISQLKKTLSSLPPLDNEGQLSDMLPYYHTVTELRTTTEALQRAILESVNGLK
ALSVGRVVVVNNKQHLNALGVILQVSNDSVNRTFTALAICEKGNEEEEGKGNNNSFPHLY
NTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYSKRQQPRFRLDPPGQAIS
TTTQELLRLAEANPRGMAALDPVNDLQLKSVDVVEDTMRLRVLRDGLREFNCIHSPTFAE
QFARVQDRMGVQEELDRLLFLVSDQSLFLLPEYHQRIKVLQSLQYVDSSGAVQLKGRVAC
QISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQKTQVEPHITNTLQEGIDRVLSVA
KRIGELQRECEIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIALLTDVQEGTVVRCIQR
LDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggacagaataaatgtgccgcccgcgggccccatggacctgcggctgtccctgctggag
atgggatgctccggccggtttgagctcatcacacaccctgtacctgaccagcctttagct
ccacagagcacgctccctcatgggcttcctcccacctgcctgagcctggagacagaagta
gagaaacagtttttacgggacgctgcctggcttcctattcatgacactgactttgccttc
cagaagtttctcaaggtgacccagagagaagtgaatgtcaactctctgatccactgctct
ccgtctgctcttcactcgggtgtctctgtcgtcagagatccaaccacagggatgctgctg
gacttcacagaggtcttactggagaacactagcctgtcagcaaagaactcactttcattc
caacgccaacctggtcctcctgcagagagcctgcgaggaagcaacactaattaccccttc
cttcccggaggaatggaggagcttactctggagcaaatcaagaagaaatctgaactggag
gaggaaatagactttgagaatgatttactcagagttccacctggacttaaagcagggatg
gatttcactgacaaagaagccaagattgcaaaggcagaggtcaacctcatgtccctgctg
tccacattggatataactgacctgcagcctgaggcagaggagaaagaggaaagcaaagga
agtgaggaagctccaaaacttcccagaacaaacagcctggaagacctgggagttaaggat
gttgtgtcatccccggctccctcagagaaagggaacaatgacaaatcaaagccaaaagag
aacccagaggaaaataagaaatgggccatccctgtcaacataagtgcaccctgcgatgat
ttctataaacgcatccccaacccagctttcaagtggccgtttgagctggacgtcttccag
aaacaagctgttctgctgctggaggctcacgactccgtgtttgtagctgcacacacgtca
gctggcaaaacagtggtggccgagtacgccatcgctctctcacagaaacacatgacaagg
accatctacacctctccaatcaaagccttgtccaatcagaagttcagagactttaagcaa
acgttcggagatgttggactgctgacgggcgacgtccagctcagtcctgaatcttcatgc
ctcatcatgactactgagatcctccggtccatgctttacaacggctcagaggtcatcaga
gacttggagtgggtgatctttgacgaggttcactacatcaacgatgccgagagaggggtt
gtgtgggaggaggttttgattatgcttcctgatcacgtcagcatcatcctcctcagcgcc
acagtgcccaacgctctggagtttagcgagtggatcggacgtatcaaaaagaagcatatt
tatgtgatcagcacaatgaagagacctgtgcctttggagcattatctgtacactggaaac
agcaccaagactcagaaagagatgttcctcctggtggatcctactggaaacttcctcact
aaagggtattacgcagctatcgatgccaagaaggagcgcaccagcaaacatgcccaatct
tttggtgcaaaaggtacttcccacaacacttcggctagtcaggaccgctcagtgtggctc
actctcctgcacttcctgtcccagcggcagcagacgccggtggttgcgttcaccttctct
cgtacaaggtgtgatgacaacgcccgctcgctggactccatggacatgaccacctccata
gagaaggccgagatccactcctttttccagaagagtgtgagtcgcctgcgaggagcagac
cggcagctgcctcagatcttgctcatgagagatctgttgaagaggggagtagcagtccat
cacagtgggatcctgccgatactgaaggaggtcattgagatgctcttctcacgaggtctt
gtaaaggtgctgtttgccaccgagacgtttgccatgggagtgaacatgcctgccaggact
gtggtgttcgacagcatcaggaaacacgatgggaccggcttcagaaatctgctcccaggc
gagtatatccagatggcgggcagagcaggacggagaggtctggacgccacgggcaccgtc
atcatcctgtgcaaggctggggttcatgagatgggagacctgcatgtcatgatgctgggt
aaacccaccaccctccagtcccagttcagactgacctacaccatgatcctcaacctgctg
cgagtcgaagccctccgtgtgaccgacatgatgaggaggagcttttctgaaaaccacagg
gacactcaggccagtgagagtaggataagccagctgaagaagacgctgtcctctctgcct
cctctggacaatgaaggccagctgtccgacatgctgccttactaccacaccgttacagag
ctacgaaccaccactgaggccttgcagcgcgctattctggagtctgtcaacgggctgaaa
gctctgtctgtgggtcgagttgtggtggtgaacaacaagcagcacctcaacgctctggga
gttatcctacaggtgtcgaatgactctgtgaatcgcaccttcacagctcttgctatctgt
gagaagggcaatgaggaagaggaaggaaaaggaaacaacaactctttcccccacctctac
aacacagctctcttcatacctgaaggcccttgcagtcacacagtgcagaagttaaagctt
caggacatctcagccatcacagtgaaaaccctcaaagtgattcctgaccggattatcgac
aactacagcaagaggcaacagccacgattcaggctggatcctcctggccaagccatctcc
acgactacccaggagctcctgcgattggccgaggccaaccctcgcggcatggcggccctc
gaccccgtgaacgacctccagttgaagagcgtggatgtggtggaggacaccatgaggctc
cgtgtgctgcgagatggcctcagagagttcaactgcatccactcgccaacgtttgcagag
cagtttgctcgggttcaggacaggatgggtgtgcaggaggagctggacaggttgctgttc
ctggtgtcggaccagtctctgtttctgctacctgaataccaccagaggatcaaggtgctg
cagtccctccagtacgtggacagcagcggggcggtgcagctgaagggccgcgtggcctgt
cagatcagcagccacgagctgctgctgaccgagctgctgttcgagaacgtcctaagcccg
ctggcccccgaggagagcgccgccctgctgtcctgtttggtattcacgcagaaaacacag
gtggagccgcacattaccaacacactgcaggagggtatcgatcgggtgctttcagtggcc
aagcgtattggagagctgcagagggagtgtgagataccgcagacagctgaggagtttgtt
ggccagttcaagtttggcctgacagaggtggtgtactgctgggccagaggcatgccgttc
gcagagatcgccctgctgaccgacgtgcaggagggcacggtggtccggtgcatccagcgc
ctggatgaggtgctgaaggaggtgcgccaggccgcccgcatcgtgggagactccgtcctg
gggagcaagatggagaaagcctccctggccatccgcagggacatcgtcttcaccgcctcc
ctctacacccactga
DBGET
integrated database retrieval system
