Pseudochaenichthys georgianus (South Georgia icefish): 117455740
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Entry
117455740 CDS
T09629
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117455740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117455740
03021 Transcription machinery [BR:
pgeo03021
]
117455740
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117455740
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG TOX
117455740
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117455740
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117455740
PBAF complex
117455740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
GCN5L1
HMG_WDHD1
Pcf11_helical
Motif
Other DBs
NCBI-GeneID:
117455740
NCBI-ProteinID:
XP_033951169
LinkDB
All DBs
Position
1:complement(4752941..4774889)
Genome browser
AA seq
430 aa
AA seq
DB search
MSKRPSHAPPPPPAPTTQMSNSSGFVGYNPYSHLAYNNYRLGGSQSSNSRVTQNSSGINI
PKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQDYLNDY
EAEKIEYNESMKAYHNSPAYLAYVTAKSRAEAAQEEESRQRQSRLDKGEPYMSIQPAEDP
DDYDDGFSTKHSAAARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQR
KLEAELLQIEDRHQDKKRKFIEATESFTNELKRLCRMKVEVDMEKISTEISAAEEGARKR
MADREKDAGERGAREAPSCVLAEEDKHVCATHGSKPKNPLSEGGSTEGEGAETSSTEAQG
KPKSSEEVEAHPGSEEGASEDKESVPEGAMEEGSSDSNTGSETPSAQTEEAQPSEPSEGP
SRARAAQSNT
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaggccatcccatgccccgcccccccctcctgcccctacaacacaaatgtcc
aacagttccgggtttgtagggtacaacccatacagccacctggcctacaacaactacaga
ctgggaggaagccaaagcagcaacagtcgggtaacgcagaactcctctggaataaatatc
ccaaagccacccaagccgcctgataagccattgatgccatatatgagatatagtcgtaag
gtttgggatcaagtaaaagcctccaatcctgatctgaagctatgggaaattgggaagata
atcggtggcatgtggagggacctcactgatgaggagaaacaggattatttgaatgactac
gaagcagagaagattgagtacaatgagagtatgaaggcctatcacaactcgccagcctac
ctggcctacgtcactgcaaagagccgggccgaggcagctcaggaggaggagagccggcag
aggcagtccaggctggacaagggcgagccgtacatgagcatccagccagcggaggatcca
gatgattacgacgacgggttctctacaaagcactcggctgcagctcgtttccaacgcaac
caccgtctgatcagcgagatcctcagtgagagcgtggtccctgatgtgcgctcagttgtg
accactgctcgcatgcaagtcctcaaacggcaggtccagtctttgatggtacaccagaga
aagttggaggcagagttgcttcagatcgaagaccgccaccaggacaagaaaagaaaattc
atcgaggccaccgagtcgttcacaaatgagctgaaaaggctgtgccgtatgaaggtggaa
gtggacatggagaagatttctacagagatttcagcagcagaagagggagcccgcaaacgc
atggccgaccgtgagaaggatgcaggagagcgaggtgcacgggaggcccccagctgtgtc
ttagcagaggaagataaacacgtatgtgccacgcacggcagcaagcccaaaaaccctctg
agtgaagggggcagcaccgagggcgagggagcagagaccagcagcacagaggcacaaggg
aagccaaaatcctctgaagaggttgaggctcatccaggcagcgaggagggcgcatcggag
gacaaggagagcgtcccagagggagccatggaggaggggtccagcgacagtaacacgggc
tcagagaccccctctgctcagacagaagaggcccagcccagtgagccatcagaggggccc
agcagggcgagagcagcgcagtccaacacctaa
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