Pseudochaenichthys georgianus (South Georgia icefish): 117455746
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Entry
117455746 CDS
T09629
Name
(RefSeq) tenascin-like isoform X1
KO
K06252
tenascin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
pgeo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117455746
04518 Integrin signaling
117455746
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117455746
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pgeo00536
]
117455746
Glycosaminoglycan binding proteins [BR:
pgeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117455746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_2nd
Fn3_VIN3
FN3_Tor_3rd
DUF7949
hEGF
DUF4998
EGF
Motif
Other DBs
NCBI-GeneID:
117455746
NCBI-ProteinID:
XP_033951180
LinkDB
All DBs
Position
12:22313583..22343912
Genome browser
AA seq
2357 aa
AA seq
DB search
MGARGVLGCLLLTALLSLSNAGLVKKILRHRRQTLESPKKGHNITLPSADRPVVFNHVYN
INVPASALCSEDVDAPESTDLHPTNAAVVSGLPGTEHTVNGENQIVFTHRINIPRRACGC
TDDMPGLKELLSRLEMLEGEVSTLRDHCGSSQVTGKLGTKPYCSGHGNYSTETCGCICEP
GWKPPNCSEPECPNDCQDRGLCVGGKCVCFKGFTGKDCALDDCPVDCGTYGQCVGGECVC
SYGYYGEDCSQTKCLSNCQGRGRCEDGDCVCDEPWTGPDCSELICPKACYDRGRCVNGTC
YCNEGFTGEDCGEHTCPNNCLSNGYCVDGKCVCAAGFNGEDCSRVICLNDCNDRGTCFNG
ICICDVGYQGADCSQLACLNNCNNRGQCINGQCDCDVGFQGDDCSELSCPNDCRHRGRCV
NGQCVCEEGFAGEDCSIRTCPSNCYGRGECIKGRCVCHSGFTGEDCAELSCPNNCQNRGR
CIDGQCVCDEGFSGEACGQKACPNDCLARGYCDDGKCICPEGYSGDDCSVHACPGDCNNR
GHCINGKCTCEAGYEGESCADLSCPNNCQDKGRCENGQCVCDEGYIGEDCSEVSSPKDLT
LGEVTPDTVDLNWENEMLVTEYLVTYVPTRTGGLQQEFIVPGDKTAATVKELEPGIEYLI
SVYAVLSNKRSIPVSARVATALPKPEGLIFKSVSESSVEVMWDQVDISFDGWEIYFRNTK
EENGKIVSPLPPDQNQFIQSGLGPGQEYEVSVNIIKNNTRGPQTIEKVMTKIEGPRQVEV
KDVTDSSALVSWSLPVAPMDRLTLAYRPSSEPSQEAIVEVSIPETQYSIDSLKPDTEYTV
SLISRRRDVSSDPVIATFTTALDAPKDLKAVAQTDESITLQWTNSQADVGNYLVKYTPLS
GATHGEELFPRGPGDTTKATITGLKPGTEYGIGVTAVKKDRESFPATTNAATDIDPPRDF
TELESTETSLTLSWQKPQAKVGAYRLVYVSRDGEVEEVEIPPTETSHVLYNLIPGMSYTV
TLAAERGLKRSTPVTLSATTATFTFYLADSDDHDLTTPPGSEDNVISFVHLESQFSVETE
PEEEHGKLTVSGITPDGFDLSWELKAHSVYDSLAVEYKDTQRLWDVREVQLPGDATGFRI
QGLNASKEYQMKLYGNINSQRSSLLEAVAVTAPKPTSPDVLMMSVKDAPTTALDTEAVRN
PDPLRPLNTSDTEVMSSGAEPESSILEVLGHLTVNVSSSGLSLAWSAPDEAFESFLVELS
APSGPTEAHVTTLPGGVRKAEIEGLSPSTKYNITVQGLVEGKRSLPLTVFATTEELEPMV
GNLTISDITWDGFTASWSPMGGEFESFVIEVTNLDNFEESQNLSLSGDAFSLGLSGLNPN
TSYMVGLFGMYQGSFLEPVYTEATTVHLPVLGELYISNLTSESFSISWNGTDGKFDGYIL
EIIDSDWLTEPKEYNISHNAKSHDVKGLRPTTDYVAYFYGTYKGSRTSAVSIVASTAEEP
DLSRLVVSNITSDRFSLSWRTGEKAFDNFIVEVRESALPSQAMGRALPRDVHSTVMAGLK
ASTSYDIKLYASAGGQNTQPLFEVATTEDVPLLGPLAASSVSPHNLSLSWSTVSGHFDGF
VIRVSDPEQQSDTLEFRLPRDGRDLTVSSLMDATGYDIELYGISHGRQTATVLTHAVTAP
LPRVENLSISRITPYGFRVSWEVKQQEALAPSSGGFRHFQIVVTDSGWLLEPQEFTVPGN
QSHLDIWGLITGIGYEVRLTGVSESGLLSRPLTTVAVTEAEPEVEHLFVSDTTAEGFRLS
WTSDEDLFDRFVIKIRDSKRLAHPHEYSVRGDERTTVLTGLLSGTEYEIELSGVTLDRRS
QPIFGVAQTGLSTPNGLSFSEVMDSSAVVHWSMPRFPVDNYRITYVPFEGGSPLMVTVDG
DVFEALLPNMSPGRKYQVTVSAMKGLEESDPNTDTVITALDRPQGLTAANVTDTSALLLW
QPSVATVDGYIITYSADSVSPVVEHVSGNTVEFEMGSLVPATHYTVGVHAMRDTQKSDSA
DTDFTTDVDPPRDLRAINVQTDGATLTWKPPQAAVTGYTLTFDSADGVIREVVLSPTASS
YNMAQLTDSTEYNVKLQAIAGPQRSRHVTTVFTTIGQLYRHAKDCAEIFLNGETTSGLYT
ISVGGEESQPIQVYCDMTTDGGGWMVFLRRQNGNLEFFRNWKNYTAGFGNRSDEFWLGLS
NLHKITNSGHYDLRVDMRDEGESAYAQYDKFTIAEPRTRYKVYMGAYSGTAGDSMTYHQG
RPFSTYDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGKYGDLSHSKGINWFHWKGHEHSI
EFAEMKIRPANFRNERS
NT seq
7074 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcacgaggtgttctgggctgcctcctcctgactgctttgctcagcttatcaaat
gccgggctcgtgaagaaaatcctccggcatcgacgacagactctggaatcccctaaaaaa
ggacataacatcacgctgcccagtgcggaccgtcctgtcgttttcaaccacgtctataac
atcaatgttcctgccagtgccctgtgctcggaggatgtggacgctccagagagtacggac
ctccatcctacaaatgcagcagtcgtttcaggccttcccgggactgagcacacagtcaac
ggggagaaccagatcgtcttcacccaccgtatcaacataccacgacgggcctgtggctgt
actgacgacatgcccggcctgaaagagctcctaagccgactggaaatgctcgagggagaa
gtttcaacactgagagatcactgcggcagttcacaggtcacaggtaagttgggaactaaa
ccctactgcagtggtcatgggaactacagcactgaaacctgtggctgtatatgtgagccg
ggctggaaaccacccaactgctctgaacccgagtgtccgaatgactgccaggaccggggc
ctctgcgttggcggaaagtgtgtgtgcttcaagggattcaccggaaaggactgcgcactc
gacgactgccctgtggactgcggtacatacggccagtgtgtgggaggtgaatgtgtctgc
tcctatggttactacggcgaagactgctctcaaaccaagtgcctcagcaactgccaaggc
cgcggccgctgtgaagacggagactgcgtttgtgatgaaccctggactggccctgactgc
tctgaactcatctgccccaaagcctgctatgaccgtggacgctgcgtgaatggcacctgc
tactgcaatgaggggttcaccggggaggactgtggagagcacacctgtcccaacaactgc
ctcagtaatggttactgtgtagatggcaaatgcgtgtgcgctgccggcttcaatggagag
gactgctctcgagttatatgcctgaacgactgtaacgacagaggtacgtgcttcaacggg
atatgtatctgcgatgtgggctatcaaggcgcagactgcagccagttggcatgcctcaac
aactgtaacaacagaggccagtgcataaacgggcaatgtgactgcgatgttggtttccag
ggagatgattgctctgagctttcctgtccaaatgactgccggcacagggggcgctgtgtg
aacggccagtgtgtgtgcgaggagggctttgctggtgaggactgcagcatcaggacctgc
ccctcaaactgctacggccgcggtgagtgtatcaagggacgctgtgtgtgtcattcaggc
ttcaccggtgaggactgtgctgagcttagctgccctaacaattgccagaaccgcgggcga
tgcatcgatgggcagtgtgtctgcgatgaaggcttcagtggggaggcctgcggtcagaaa
gcttgtcccaacgactgcctggcccggggttactgcgacgacggcaagtgcatctgtccg
gaaggctactcaggagacgactgctctgtgcacgcctgcccaggtgactgcaacaacagg
ggacactgtatcaatggaaagtgcacgtgtgaggctggatatgaaggggaaagctgcgca
gaccttagctgccccaacaactgccaggacaaaggccgctgtgagaacggacagtgcgta
tgcgatgagggatacatcggagaagactgctcagaagtgtcttctccgaaggaccttact
ttaggcgaggtcacccctgacaccgtggacctgaactgggaaaacgagatgctggtaaca
gagtaccttgtgacgtatgtgcccaccagaactggtggtcttcaacaagagttcattgtg
ccaggagacaaaactgctgccaccgtcaaagagcttgagcctggcatcgagtatctgatc
agtgtctacgctgttctaagcaacaagaggagcatccccgtcagtgcgcgggtggcaaca
gcgcttccaaagccagagggtttaatattcaaatcagtgagtgagagctctgtggaggtg
atgtgggaccaggtggacatctcctttgatggctgggagatctatttccgcaatacgaaa
gaagaaaatggaaaaatcgtgagcccccttccacctgatcaaaaccagttcatccagtca
ggacttggaccgggacaggagtatgaagtctctgttaacatcatcaagaacaacacaaga
ggaccccaaacaattgaaaaagtcatgaccaagattgaaggcccccggcaggtggaggtg
aaggacgtgacggactcctctgctctggtcagctggtctctgccggtggctccgatggac
agactcaccttggcctacaggcctagctctgagccttcacaagaagccatagtggaggtt
tccatcccggagactcagtacagcattgacagcctgaagccagacaccgagtacaccgtg
tcgctcatctccaggcgcagagacgtctccagtgaccctgtcatcgccacgttcactaca
gccctggatgcgcccaaggacctgaaggccgtggcacagacagacgagagcatcaccctg
cagtggaccaacagtcaagctgatgttggcaactatctggtgaaatacactcccctctcc
ggagccactcatggggaggaactgtttcctcgagggccaggagacaccacaaaagctacc
atcactgggctgaagccagggacggagtatgggatcggtgtgacggcggtgaagaaggac
agagaaagcttccctgctactacaaatgcagcaactgatatcgatcctcccagagatttc
acagaactggagtcaacagagacctcgctcacgctgagctggcagaaacctcaggccaag
gtcggtgcctacagactggtgtacgtctccagggatggagaggtggaggaggtggagatc
ccgcccactgagaccagccatgtcttgtacaacctgattcctggaatgagctacaccgtc
actttagctgctgagagggggctcaagaggagcacaccggtcacattgtctgcaaccaca
gccactttcacattttatttagcagactcagacgaccatgatctaacgactcctccaggc
tcggaggacaatgtcattagctttgtgcatttagagtcccagttttcagttgagacggag
cccgaggaggagcatgggaagttgactgtctcgggcatcacgcctgacggatttgacctc
tcttgggaactgaaggctcatagtgtctacgatagtttggcagtagaatataaagacact
cagcggttatgggatgtgagagaagtccaacttcccggagatgccactggctttagaatc
cagggactgaatgcatcgaaagaatatcaaatgaaactttatggaaatatcaatagccaa
agatcttcgctacttgaagctgttgcagtcacagcacccaaacctacctctccagatgtt
cttatgatgagcgtgaaagatgctccaacaactgctctggatactgaagcagttcgaaac
ccagatcccctccgtcccctaaacacttctgatactgaagtgatgagttctggggctgag
cctgagagctccatcctggaagtattgggacacctcacagtcaatgtgtcttccagcggc
ttaagcctggcgtggtcggcgcctgacgaggcttttgaaagctttttggtggagctcagt
gctccatcagggccaacagaggctcatgtaaccacacttccaggaggtgtgagaaaggct
gaaatagagggattgtccccctccacaaaatataatattacagttcaagggctggtggaa
gggaagcggtctttacctctcacagtttttgctactacagaggagctggagcccatggtg
gggaacctcaccatctctgacattacatgggacggcttcactgcgtcctggagccccatg
gggggggaatttgaaagctttgtcattgaggtaacaaacttggataatttcgaagagagc
cagaacctcagtctgtccggagacgctttcagcctgggcctctccggactcaaccccaac
accagctacatggttggcctgtttgggatgtatcagggctccttcctggaacccgtgtac
actgaagccaccacagtgcatctaccagtgcttggagagctttatatctctaatttaaca
tcagagagcttttcaatctcctggaacggcactgatggcaaatttgatggttatatcctg
gagataattgattctgattggctaacggagccaaaggaatataacatttcccacaatgca
aagtcccatgatgtcaaagggctcaggcccaccactgactatgtagcctacttctatggg
acatacaagggatcccgaacaagtgctgtcagtattgttgcatcaacagctgaagagcct
gatttgtccaggctagttgtttcaaacattacctcagacagattttctctgtcgtggcgg
acaggagagaaggcttttgataactttatagtagaagtcagagagtctgctttgccctcg
caggcaatggggcgcgctctgcccagagacgtgcactccacagtcatggccgggctcaaa
gccagcacaagctacgacataaaactgtacgccagcgctggtggccagaacacacagccc
ctgtttgaagtagctacaacagaggacgtcccactgttggggcccctagctgcttcatcc
gtgagcccacataacctcagcctgtcctggagcactgtgtcaggtcactttgatggcttt
gttatccgggtcagtgaccctgagcagcagtctgatacactggagttcagactgcctcgt
gacggccgtgacttaacggtctctagcctgatggatgccacaggctatgatattgaactg
tatggtatctctcatgggcgccaaactgccactgtattaacccacgccgtcacagcgcct
ttgcctagagtggagaacttgagcatttccagaatcaccccctacggcttccgtgtgtcg
tgggaggtgaagcagcaggaggctttagcaccctctagtggcggcttcaggcattttcaa
atagtggtgacagactccggctggctgctggagcctcaggagttcactgtgccgggaaac
caaagtcacctggacatctggggcctcatcaccggcataggctatgaggtcaggctgacc
ggggtgtcagagtcagggctcctctctcggcctctcactacagtggctgtgacagaggct
gagccggaggtggagcatctttttgtgtcggacaccacggctgaaggttttcgtctgtca
tggacgtctgatgaagacttgtttgacagatttgtgatcaaaataagagacagtaaaaga
ctagcccaccctcacgagtacagtgtccgcggtgatgaaaggaccacggttctaactgga
ctcctgagtggcaccgagtatgaaatagagctttccggtgtcacattggatcgacgctca
caacctattttcggggttgctcagacaggcctcagtactccaaatggactgagcttttct
gaagtgatggactcctcagctgtggtccactggtccatgcctcgctttccagtggataac
tacagaatcacctacgtgccctttgaaggaggaagcccgctgatggtgactgtggatggc
gacgtgttcgaggctctgctgcccaatatgagccctggcagaaagtaccaggtgactgtg
agtgctatgaagggcctggaggaaagtgaccccaacactgacactgtcatcacagctctg
gacagacctcagggcctgactgcagctaatgtcactgacacgtccgccctgctgctatgg
caaccgtctgtcgccactgtggatggctacatcattacttacagtgctgactcggtgtcc
cccgtggtggagcatgtttctgggaacacggtggagtttgagatgggctctctggttcct
gcaacccactacaccgttggagttcacgctatgagagacacccagaagagtgactctgct
gacactgacttcaccaccgatgtggatcctcctcgtgatctgagggctattaacgtccaa
actgacggtgcgactctcacatggaaacctccgcaggcggcagtgactggctacactctc
acctttgactctgctgatggcgtaatcagggaagtggtgctcagcccgacagcgtcctct
tataacatggctcagctcaccgactccacagagtacaatgtgaaactccaggccatcgct
ggaccccagaggagtcgtcatgtgaccaccgtcttcactaccattggacagttgtacaga
cacgctaaagactgcgctgagatttttctgaacggagagacgacctctgggctgtacacc
atcagcgtgggaggagaggagagccagcccatccaggtctactgtgacatgaccacagac
ggaggaggctggatggttttcctcagacggcagaatggaaatctggagttcttcaggaac
tggaagaactacactgctggctttggaaacaggagcgatgagttctggctgggtctttcc
aaccttcataaaatcacaaattctggccattatgatctgcgagtggacatgagggatgaa
ggagaatcggcctacgctcagtacgacaagttcacgattgcagaaccaagaacccgctac
aaagtctacatgggagcgtacagtggaacagcaggggactccatgacgtaccaccagggt
cgacctttctccacctacgacaacgataacgatattgctgtcaccaactgcgccttgtcc
tacaaaggagccttttggtataaaaactgtcatcgtgtcaacctcatggggaaatatggg
gatctcagtcacagtaaggggatcaactggttccactggaagggccacgaacactcaatt
gaatttgcagagatgaagattaggccggctaacttcagaaatgaacgatcatag
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integrated database retrieval system
