Pseudochaenichthys georgianus (South Georgia icefish): 117455850
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Entry
117455850 CDS
T09629
Symbol
sbno1
Name
(RefSeq) protein strawberry notch homolog 1
KO
K26273
protein strawberry notch
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117455850 (sbno1)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117455850 (sbno1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
117455850
NCBI-ProteinID:
XP_033951346
LinkDB
All DBs
Position
12:20903836..20921861
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AA seq
1402 aa
AA seq
DB search
MDPGQDLLLAALSESGICPNDFGFFDVDPQDVAQPSTTQQSISISALEGGMGTESVDVFR
NNPPVPVPIVTIRHKPQPSTTTFVLNQLNQLPSLGAAVTKQSVTNPIKHTITVTKVVHVS
NSALRGTSTLSSTSTPSGPTVVPSNRDQQIQLKDLLRTGNVRSTALKGNSLMELMRLKPP
SNIAPPVATATSTAEMINGIKKEVFGKESPRIWMNEDVKMQPFSHSMKIPGMKEEDEPEE
EEEDELGVVETYAEYMPMKLKIGLRHPDPVVETSSLSSVNPPDVWYRLSISEEVIDRGCL
SALQLEAITYAAQQHETFLPCGDRAAYLIGDGAGVGKGRTVAGIIYENYLLGRKRSLWFS
VSNDLKYDAERDLKDIGAKNISVHSLNKFKYGKITSKHNGSVKKGVIFATYSSLIGESQS
GGKYKTRFQQLLHWCGEDFDGVIVYDECHKAKNVCPVGSSKPTKTGLAVLELQNKLPKAR
VVYASATGASEPRNMAYMNRLGIWGLKTPFREFNNFIQAVERRGVGAMEIVAMDMKLRGM
YIARQLSFTGVTFKIEEVPLTPQYIKMYNKSVKLWVLAREKFQAAANLMDAEQRMKKSMW
GQFWSAHQRFFKYLCIASKVRRVVQLAREEVANGKCVVIGLQSTGEARTLEALEEGGGEL
NDFVSTAKGVLQSLVEKHFPAPDRQKLYTLLGIDLSAKKTPSPIEPAAQPEQKGKKRKGS
DVKKQPKKKPRKHGGLSGTSSEESQSEESDRESGKESDDSFKSVSSGDEDDDFNPFRDES
DDDDEDDPWLIRKEPKKGKEKKKKKRRKSVDPDCIQSALLASGLGSTRPAFTAPVAPPSA
PAIVKAESQDSCLTSEDAVDNAQKMKRDLLEQLDELAEDLPPNTLDELIDELGGPENVAE
MTGRKGRVVSNDDGTITYESRSELDVPVEILNLTEKQRFMDGEKNIAIISEAASSGISLQ
ADRRVKNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQRFASIV
AKRLESLGALTHGDRRATETRDLSRFNFDNKYGRNALEIVMKSIVKLDSPLVPPPSTFRG
DFFKEIQTGLIGVGIINLDERFGAMILDKDYNNMGKFLNRILGMEVQQQNALFQYFSDTL
AAVIQEAKKSGRYDMGILDLGNGDEKVKKVDCKKFLTPGYTTAGHVELYNVSVERGMSWE
EATHVWADQNGGDDGFYVQMRNNKKTAILVKEVNPKKRLFLVYRPNTGRQVKLETYADIK
KKFKKVMSDDAKQHWMDQYLSSAKICSHAFWRGNCKKASVGLLCEVGLRCRTYYVLCGSV
LSVWNELEEVLTPLSGTNVKVQIVRLRTEDGQRIVGLIIPANCVNALINKLSTSDQSQQL
AVQELQKRQQLHPQSLSQAPNT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggatcctggacaggatttactcctcgctgccctgagtgagagtggcatttgtccaaat
gattttggcttttttgatgttgatcctcaggatgttgcacagccctccacaacccagcaa
tctatctccatcagtgccctggagggtggtatggggacagagtcggtggatgtttttcga
aataatcctccagttccagtaccgattgttactatcaggcacaaacctcagccatcaacc
accacgtttgtcttaaatcagctgaatcagttgccgtcactcggagctgctgtgaccaaa
caatcagtaacaaatcccatcaaacataccataactgtcaccaaagtggtccatgttagt
aattcagctttgcgaggaacttcaaccctatcctctacaagtactccttcagggccgaca
gtagtgccttctaacagagatcagcaaattcagctgaaagacctcctccgaactggcaat
gtgagaagcactgctcttaaagggaacagtttgatggagctcatgagactgaagcctcca
tctaacatcgctccaccagtagcaacggcaacttcaacagctgaaatgatcaatgggatc
aagaaagaagtatttggtaaagagtctcccaggatctggatgaatgaagatgttaaaatg
cagcccttctcacattcaatgaaaatcccagggatgaaggaggaggatgagcctgaggag
gaagaggaggacgagttgggtgttgtagagacttatgcagagtacatgccaatgaaatta
aagattggcctgcgacatccggatcctgtggtggagaccagctccctgtccagtgtcaac
cctccagatgtgtggtacagactgtccatctcagaagaagtcattgatcgtggctgcctg
tctgcactgcagctggaggcaattacatatgctgctcagcaacacgagacattcctcccc
tgcggtgaccgagctgcatatttgatcggagatggagcaggtgtggggaaaggccggacc
gttgcaggcatcatctatgagaattaccttctaggcagaaagagatcactttggttcagt
gtctcgaacgacttgaagtatgatgcggaaagggatttaaaggacataggagccaaaaac
atctctgttcattcattgaacaagttcaaatatggaaaaatcacctcaaaacacaatggc
agtgtgaagaaaggtgtgatattcgccacctactcctccttgatcggagagagccaatcg
ggaggtaaatacaagaccagatttcaacaacttctccactggtgtggggaggactttgac
ggagttattgtgtatgacgagtgtcacaaagccaaaaatgtatgtccagttggatcatcg
aaacctacaaaaactggtcttgctgtgttggaactgcagaacaaactccccaaggctcgc
gttgtgtatgcaagtgctacaggtgcctctgaacccaggaatatggcctatatgaatcgt
ctcggcatctggggactaaaaacacctttcagagaatttaacaactttatccaagcagtt
gagcgcagaggtgttggcgccatggaaatagtagccatggacatgaaactgaggggaatg
tacattgcaaggcagttgagttttacaggagtgacctttaagatcgaggaggttcccctg
actccgcaatacatcaagatgtacaacaaatctgtcaagctgtgggtgcttgcacgagag
aagttccaggcagcagcgaacctgatggatgccgagcagcgcatgaagaagtccatgtgg
ggccagttctggtctgctcaccagaggttcttcaaatacctctgcatcgcctccaaagtc
cgcagagtggtgcagctcgctcgagaggaggtcgcaaatggaaagtgtgtggtgatcggc
cttcagtccactggagaagccagaacacttgaggccttggaggaaggaggaggagagctc
aatgactttgtgtcgactgcaaaaggtgtgctgcagtccctggttgagaagcactttcca
gctcctgacagacagaagctttacactctgctaggtatcgacctctcagctaagaagacc
ccctcacccattgagcctgcagcacaaccagaacagaagggcaaaaaaaggaaaggttca
gatgtcaaaaagcagccgaaaaagaaacctcgcaagcacggtggtttgtctggtaccagc
tcggaggagagccagtcggaggagtcggacagagagtctggtaaagagagtgacgacagc
ttcaaatctgttagctcgggggacgaagacgatgatttcaacccattcagagacgagtct
gatgacgacgatgaagatgatccatggctgatcagaaaagaaccaaagaaaggaaaggag
aagaagaagaaaaagagaaggaagagtgttgatcctgactgcattcaaagtgccttgtta
gcctccgggctggggtccaccaggcccgctttcaccgcccctgttgcaccccccagcgcg
cctgccattgtcaaggcagagagtcaggatagctgcctaacaagtgaagacgcagtggac
aatgcccagaaaatgaagagagatctgttggaacaacttgatgagctagctgaggatctg
cctcccaacaccctggatgagctcatagatgaactgggaggacccgagaacgtagctgag
atgactggccgaaaaggtcgcgtggtcagcaatgacgacggcaccatcacatatgaatct
cgctctgagctggatgtcccggtggaaatcctcaatctcaccgagaagcaaaggttcatg
gatggagagaagaacatagccatcatctcagaagctgccagctctggtatatccctgcag
gccgatcgtcgagtgaagaaccagcggcggagagtccacatgacgctggagctgccgtgg
agcgcagacagagccatacaacagttcgggagaactcacagatcaaaccaggtcacggct
ccagaatatgtcttccttatctcggagctggcaggagagcagagatttgcatctatcgtt
gccaaaagactagaaagcctgggtgctctcactcacggagacagaagagcaacagaaacc
cgagatctcagccggtttaattttgacaacaaatatggccgaaatgctctggagattgtg
atgaagtccatcgtgaagcttgattctccattagttcctccaccaagtacttttagagga
gatttcttcaaagaaattcaaaccggattaataggtgtgggcatcataaatttggacgaa
cgatttggcgcaatgatactggacaaagattacaacaacatggggaagttcctgaaccgt
attttgggcatggaggtccagcagcagaatgccctgttccaatacttttctgacacactg
gccgcagttattcaggaagccaagaagagtggcagatatgacatgggcattctcgatctg
ggcaatggtgatgagaaggtgaagaaggtagactgcaagaaattcctaactccaggatac
accacagcaggacatgtagagctgtacaacgtgagcgtggagagggggatgtcctgggag
gaagccacgcatgtctgggcggatcagaatggaggggatgatggcttctatgttcagatg
aggaacaacaagaaaacagccatactggtcaaagaggtgaaccccaagaagaggctcttc
ctggtttacaggccgaacaccggcagacaggtcaaactggagacgtatgcagacatcaag
aaaaagtttaaaaaggttatgtcagatgacgccaagcagcactggatggaccagtacctg
tcgtcagcaaagatctgctctcatgcattttggcggggtaactgtaagaaagcctcagtg
ggtcttctgtgtgaagttggactccggtgtcggacgtactacgttctgtgtggctcagtg
ctcagtgtgtggaacgagctggaggaagtgctcaccccgctcagtggaaccaatgtgaag
gtgcagattgtccgcctcagaacagaagatggacagaggatagtcggactgatcattcca
gcgaactgcgtgaatgcattaatcaacaaactctcgacgtcggaccagagccagcagctc
gccgtgcaggagctgcagaaacggcagcagctccacccccaaagtctcagccaggccccc
aacacatag
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