Pseudochaenichthys georgianus (South Georgia icefish): 117455963
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Entry
117455963 CDS
T09629
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117455963 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117455963 (taf5)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117455963 (taf5)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117455963 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
117455963 (taf5)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
117455963 (taf5)
STAGA complex
117455963 (taf5)
TFTC complex
117455963 (taf5)
SAGA complex
117455963 (taf5)
SLIK complex
117455963 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_DCAF12
Beta-prop_WDR19_1st
WD_LRWD1
VPS8_N
CDK5RAP3
LisH_TPL
LisH_PAC1
Motif
Other DBs
NCBI-GeneID:
117455963
NCBI-ProteinID:
XP_033951566
LinkDB
All DBs
Position
1:complement(16417109..16425568)
Genome browser
AA seq
749 aa
AA seq
DB search
MAAVQGGQVDAVEEKDIKTEPSNDGGGNNNANDGRLLSTSPGSSSSTGSIKSAAGPPEDQ
QTLLAVLQFLRKNKLTESVEILRREAGLPEDSLELKGGDSSGSGSGAAAGSVELAGGDAS
SLLSRVTSSASTVAPAPTKAAGEDQPDVNVVLSAYSQQGDPPLYQVYYSGLKKFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHESEAKAFFEKFSGDQECYYEDDLRILSSLSKREH
MRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEGKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSM
GSKSKKQDPNAPAQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPEILPSICFYTFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDE
KTASELKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
TQFSPHGYYFISGGHDRVARLWATDHYQPLRIFSGHLADVTCTRFHPNSNYVATGSSDRT
IRVWDILTGNCVRIFTGHKGPIHSLAFSPNGKFLASGATDSRVLLWDIGHGLMIGELKGH
TDTVYSLRFSRDGEILASGSMDNTVRLWNATKAFDDLETDDFTAATGHVHLHDNSQELLL
GAYTSKSTPVIHLHFTRRNLLLAAGGYNP
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacaaggtggtcaggtcgacgcggttgaagaaaaagacattaaaacagaa
ccatcaaacgatggcggtggaaataataatgcaaatgatggaaggctgctttctacgtcc
cctggctctagttcttcgactggaagtattaaatcagcggcaggacccccggaggaccag
cagacgctgctggcggtcctgcagttcctccgaaagaacaaactgactgagtccgtcgaa
atattgcgtcgtgaagccggattaccggaggattcactggaactgaaggggggtgattca
tccgggtcaggttctggtgctgctgcgggcagtgtggaactagcaggcggggatgcgagc
tctcttctcagccgagtgaccagctcagcctccactgtagctccggcgccaactaaagct
gctggggaggatcagccggacgtcaatgtggtgctgtcggcctacagccagcagggagac
ccccccctgtaccaggtttactacagcggcctgaagaagttcatcgaatcggttctggac
tgtcaccgagcggagctgtcccaggtcttctacccgctgttcgtgcacatgtatctggaa
ctggtgtacaacaaccacgaaagtgaggccaaggcgttctttgaaaagttcagtggggat
caggagtgttactacgaagacgacctgcgcattctgtccagcctgtccaagagggagcac
atgagaggcaacgagacgctgctggacttccgcaccagcaagttcgtcctgcggatctcc
cgagactcctaccagctgctgaagaggcatctgcaggagcgccagaacaaccagatctgg
aacatcatacaagagcacctctacatcgacatcttcgatggcatgccccgcagcaagagc
cagatcgatgccatgtctggcagcctggcaggggagggcaagcgggaggccaacaaggca
aaggtttactatggactgctgaaggaaccagaaattgagcttccccttgacgacgaggac
gaggaggcagagaatgaggagggcaaacccaagaagaagaaacccaaaaaggacagcatg
ggctccaagagcaagaagcaggatcctaacgcacctgcacagaccaggataccccttcca
gaactaaaggactcagacaagctagacaagatcatgtacatgaaggaggccaccaagagg
atccgcctgggaccggaaatcctgccttccatctgcttctacactttcctcaacgcttac
cagggtctgacagctgttgacttcacagacgactccagcctgatcgcggggggcttcgct
gactccacagtgcgggtgtggagcgtcacgccaaagaagctccgcaaggtcaagtccgca
gcagacttgaatctgatcgacaaagagtcggacgacgtgttggagaggatcatggatgag
aagacggccagtgagttgaagatcctgtacggacacagcggcccagtgtacggcatcagc
ttcagcccggacagaaactacttgttgtcgagttctgaagatggtacggtccggctgtgg
agtctccaaacattcacgtgtctagtgggctacaaaggccacaactacccagtgtgggat
acccaattttccccgcatgggtactattttatctccgggggacatgacagagttgcccgt
ctgtgggcgacagatcactaccagcctctacggatcttttctggtcacctagctgacgtc
acttgcacccgcttccaccccaactccaattatgtggccacagggtcatcggatcgcacc
atccgggtgtgggacatcctgaccggaaactgcgtccgcatcttcaccggtcacaagggt
cctatccattcgctggctttctctcccaacgggaagttcctggcttcaggggccactgac
agcagagtgctcctgtgggacatcgggcatgggctgatgattggtgaactgaaaggccac
acagatactgtgtactccctgcgcttcagcagagacggagagatccttgcctccggctca
atggacaacacagttcgtctttggaacgctacaaaagcatttgatgatttagaaacagac
gatttcacggcggctacagggcacgtccatctacacgataactcccaggagcttctgctg
ggcgcctacacgtctaaatccacccccgtcatacaccttcacttcacccgcaggaacctg
ttgctggccgccgggggctacaatccatga
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integrated database retrieval system
