Pseudochaenichthys georgianus (South Georgia icefish): 117455968
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Entry
117455968 CDS
T09629
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03320
PPAR signaling pathway
pgeo04148
Efferocytosis
pgeo04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117455968 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
117455968 (rxraa)
03320 PPAR signaling pathway
117455968 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117455968 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pgeo03310
]
117455968 (rxraa)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
117455968 (rxraa)
Nuclear receptors [BR:
pgeo03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
117455968 (rxraa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
Motif
Other DBs
NCBI-GeneID:
117455968
NCBI-ProteinID:
XP_071061065
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Position
12:complement(6374237..6482028)
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AA seq
500 aa
AA seq
DB search
METKPFLSLGFLKPQCSLAPPMQRGRSGEACSCFTGMCHLHQRRISSDSSGHMTSSPLGS
PTSHRGMHPSLLSPSMGHSGSLHSPISSLGSPMNGLTSPFSVISSPMGPHSMNSPGMGYG
PSLSPQLNSPMNSVSSSEDIKPLLGLNGVMKVPAQPSGTILSLTKHICAICGDRSSGKHY
GVYSCEGCKGFFKRTVRKDLSYTCRDSKHCVIDKRQRNRCQYCRYQKCLAMGMKREVLLH
AAVQEERQRAKERNENEVESTGCANEDMPVEKILEAEQAVEPKTETYIETNLGAPSNSPN
DPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSITIKD
GILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKG
LSNPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI
GDTPIDTFLMEMLEAPHQIT
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccgttcctgtcattggggttcctgaagccccagtgctcgttggctcct
cccatgcagcggggtcgctcgggcgaggcatgttcctgtttcaccggcatgtgccacctc
catcagcgtcgcatatcctcagattcgtcaggccatatgacctcgtcacccctgggctca
cccacatcccacagaggaatgcacccgtctctattaagcccatccatggggcactcgggc
tccctgcactctcccatcagctcgctgggttcgcccatgaacggcttgacatcacccttc
tccgtcatcagctcaccgatgggcccccactccatgaactcgcctggtatgggatacggc
cccagccttagcccccagctaaactctccgatgaactcggtcagcagctcggaggacatc
aagcccctgctgggcctcaacggcgtgatgaaggttcctgcccagccctcaggcaccatc
ctgtcgctcaccaaacacatctgcgccatctgtggggaccgctcctcaggtaaacactac
ggcgtgtacagctgtgaaggctgcaaaggttttttcaaaaggacggtgcgcaaagacctg
tcctacacctgtcgcgacagcaaacactgcgtcattgataagcgccagaggaaccgctgc
cagtactgccgctaccagaagtgtctagccatgggcatgaagagagaagttttgttacat
gcagccgttcaggaggagcgccagcgagccaaggagagaaatgagaacgaggtggagtcc
accggctgcgccaacgaggatatgcccgtggagaagatcctggaggctgagcaggcggtg
gaacctaaaaccgagacctacatcgagaccaaccttggtgcgccatccaactcgcccaac
gacccggtaacaaatatctgtcaggcggcagacaagcagctctttactttggtggagtgg
gccaagaggatcccacacttctctgagctgccactcgatgaccaggtcatcctcctacga
gcaggttggaatgaactcctcattgcgtcattctcgcaccgctcgataacgatcaaagac
gggatcctgttggctaccgggctgcacgtccatcgcaacagcgcccatagtgccggagtg
ggcgccatctttgacagagtgctcacagaactggtgtcaaaaatgagggacatgcagatg
gataagacagaactggggtgccttcgagcgatagtccttttcaacccagactctaaaggc
ttgtccaatcctggtgaggtagaagctctgagagagaaagtgtacgcgtctttagaggcc
tactgcaaacagaagtaccccgaccagcctggccgatttgccaaactgttgctgcggtta
ccggcgctgcgatccatcggcctcaagtgtctggagcacttgttcttcttcaagctcatc
ggcgacacgcccatcgacacgttcctcatggagatgctagaagcaccgcatcaaattaca
taa
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