Pseudochaenichthys georgianus (South Georgia icefish): 117455986
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Entry
117455986 CDS
T09629
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X3
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04020
Calcium signaling pathway
pgeo04080
Neuroactive ligand-receptor interaction
pgeo04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117455986 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117455986 (grin1a)
04082 Neuroactive ligand signaling
117455986 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117455986 (grin1a)
Ion channels [BR:
pgeo04040
]
Ligand-gated channels
Glutamate (ionotropic)
117455986 (grin1a)
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
117455986
NCBI-ProteinID:
XP_033951564
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All DBs
Position
12:complement(5060017..5095769)
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AA seq
901 aa
AA seq
DB search
MRLFLLAVLFWCSCARAGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQVYGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISSQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDLMREFNWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQDTNLTALLLEAKELEARVIILSA
SEEDAAAVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPKGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKTRLVQVGIYNGTQVVMNNQRKIIWPGGETEKPQGFQMSTRLKIVT
IHQEPFVYVKPTQPDGTCHEEMTLNGVLIKKVICTGPNETIPGRPIVPQCCYGFCVDLLI
KLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNERA
QYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFS
PFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIV
ASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYR
HMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRK
DSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGI
AAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQQYPPTDITGQLNLSDPSVSTV
V
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttctgttggcggtgctcttctggtgctcctgcgcgcgggccggctgtgag
ccgaagatcgtgaacatcggggccgtgctgagccagaagagatacgagcaggtcttcaaa
gatgccgtgacccaggccaaccaggtttatggaagagataaattcaagctgactgccatc
tccgtcacgcacaagcccaacgccatccagatggctctgtccgtgtgcgaggacctcatc
tccagtcaggtctacgctatcctggtgagtcaccctccccagtccaatgaccacctcact
ccaacgcctgtctcctacactgcgggcttctaccgcatccccgtggtggggctcaccacc
cgcatgtccatctactccgacaagagtatccacctgtcctttctgcggacagtccctcct
tactcccaccaggcgcacgtgtggttcgacttgatgcgagagttcaactggaaccacatc
atcctgatagtgagcgatgaccacgaggggcgcgctgctcaaaagaggctggagaccctg
ctggaggagagagaaacaaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacctaaggcagagaaagtcctccagttcagccaggacactaac
ttaactgccctgctgctggaggccaaagagctggaggcccgcgtcatcatcctgtccgcc
agtgaggaggacgctgctgcagtgtacaaggctgcccgcttcctcaacatgacgggctcg
gggtacgtgtggctggtgggcgagcgggagatgtcgggtaaagccctgagcgaggcgcca
gacggtctgatcggcctccagctcatcaacgggaagaatgagtcggcgcatatcaatgat
gcggtggctgtggtggctcagtccatccaggagctctttgagaaggagaacatcactgaa
cccccgaaaggatgtgtgggcaacaccaacatctggaaaacagggccgctctttaaacgg
gtgctgatgtcgtctaaataccccgagggcctcacaggtcgcgtggagttcaatgacgac
ggggacaggaagtacgcccattacagcatcctcaactaccagaagactcgactcgttcaa
gtcggcatttacaacggaacacaggtggtaatgaacaatcagcggaagatcatctggcct
ggaggagagacggagaaaccacagggcttccagatgtccactcgactaaagatagtgacg
attcaccaggagccatttgtgtatgtgaaaccaactcaaccggatggaacatgccacgag
gaaatgacattaaatggagtcttaataaaaaaggttatctgcactgggcccaatgagacc
atcccaggacgcccaattgttccccaatgttgttacggattctgtgttgatctgctcatc
aagttggctatgaccatgaacttcacctatgaggtgcacctggtggctgatgggaaattt
ggaacacaggagcgggtgaacaacagtaacaagaaagagtggaatggcatgatgggagag
ctcctggggggcctggctgacatgattgtagccccgctgactattaacaacgaacgagcc
cagtacatcgaattctccaagccctttaaatatcaaggtctcaccatccttgttaaaaag
gaaatacctcgcagtacactggactcgttcatgcagccgttccaaagcacgctgtggctg
ctggtgggtctttcggtgcatgtggtggcggtgatgctttacctactagaccggttcagc
ccgtttggaagatttaaagtaaacagtgaagaagaagaagaagatgccctcaccttatca
tctgctatgtggttctcctggggagtgttgctgaactccggtattggagaaggtgcaccg
cgcagcttctcagcgagaatcctaggtatggtgtgggccggatttgccatgataattgtg
gcatcctatactgccaacctggctgccttcctggtgttggaccgacctgaggagcgcatc
accggcatcaatgacccaaggctgagaaacccatcggacaagttcatctacgccacggtg
aagcagagctccgtggacatctacttccggcggcaggtggagcttagcaccatgtaccgc
cacatggagaagcacaactatgagagtgccgccgaggctatccaggctgtgcgtgacaac
aagctgcatgctttcatctgggactctgcggtgctggagtttgaagcttcgcagaagtgc
gacctggtgaccacgggagagctgtttttccgttcgggctttggcataggcatgcgcaag
gacagcccctggaaacagaatgtgtccctggccattctcagttctcatgagaatggcttc
atggaagacctagataaaacctgggtgagataccaggagtgtgactcaaggagcaatgcc
ccagccacactcacctttgaaaacatggcaggggtattcatgctggtggccggtgggatt
gcagcaggtatcttcctaatcttcattgaaatcgcctataagcgccataaagacgcccgc
aggaagcagatgcagctggcctttgcggcggtcaatgtttggaggaagaacctgcagcag
tacccacctactgacatcacgggccagctcaacttgtctgacccgtctgtcagcaccgtg
gtttaa
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