Pseudochaenichthys georgianus (South Georgia icefish): 117455996
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Entry
117455996 CDS
T09629
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117455996 (rc3h2)
04121 Ubiquitin system [BR:
pgeo04121
]
117455996 (rc3h2)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117455996 (rc3h2)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117455996 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
117455996
NCBI-ProteinID:
XP_033951577
LinkDB
All DBs
Position
12:complement(12628426..12651433)
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AA seq
1153 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSSHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAQVPDVQPVSLNSAAEVENYEACKVCVEELALYLKPISGAKELSP
SAGVATLSPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQ
QLSANLWAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQA
SKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLR
ISPEQWSSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRPHL
ELLANIDHNPDVPAPSWEELESVMLAVKLVVHGLVEFIQNFSKKSHDTPQPQANSKYKTS
MCRDLRQQGGCPRGTNCTFAHTQDELEKFRLRNKKSISAGRAFPLSPGVMGKTFTMEGGI
HEELSAGVGQGLQDTGEDMASLTEGVPCLTHPQLISRGADMMEEIKRAVPNGSNGANGSN
GLSSRNTGSTEKKPISPPRTPVSHSSASSPLTTAGGRGDGGDSMPKHGQFVLRASHPSQA
SELYYQEPHSAYDTPHYQPTSGSYYQSSLHPPHKPCMARFLRSSNVPESSLPPSIGPPPS
SYPNDPHAPHPPSSSSSGFPPRDRMGPPAFHHHPGQPQYGPLAPAHGVYAPLYDSRRVWR
PQLYHREDARSNSLPPEVLHSSVYQPPLRERFNSLDSNYCSGSEHRAGLHRDYGRVPLGY
EDLFRRKQEQWAHHHHHHNANRPSQSSPIFTIDFGTEHVEGSGGQCMGCRFRGEESLAHY
SPWSCGTIGTCLSPFEPETLAHTSAHSCSEHSELDSNGGGGGGVSSSGVGKRWLHSLDHY
RRMKDEDPIIPFSEGPIISKWGAISRASRTGYHTTDPIQATACQGSANTTPINFKDYNHY
LDHSDYRWSSRGSDSSSHSSFLESEQLCASDLHCRRTSISSGEKIASDLQARQFAYSRER
GRAESEPDPERDIELELCALDMEDSEIKSQESLDLAALQSQDASHFLPPPCSSPLLSSPV
EEHSQTEGPLTENMDTHLLKKMAFRKSLSPGGFVSGGLGVGKLVLRTGSPRLGDTSTRAC
PETPGTEMLLNRS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcggcccagtggacggagttcctgtcctgtcccatctgctacaatgag
tttgacagcagcagccaccagcccatcagcctgggctgctcccacacggtgtgtaagacc
tgcctccacaagctgcaccgcaaggcctgccccttcgaccagacccccatcagcactgac
atcgacctgctgccggtcaactgtgccctgctgcagctggttggagctcaggtcccagat
gtgcaaccggtgagcctgaacagtgcagcagaagttgagaactatgaggcgtgcaaggtg
tgcgttgaagagctggctctctacctgaaacccatcagcggagcaaaggaactgtcacct
tctgcaggtgtggcgactctgagtcctagcgtgctcagccgaccgatgcagaggaagctg
gtgaccttggtgaactgccagctggtggaggaggagggccgtgtgcgggcggtgcgggcc
ggccggtcgctgggagaacggaccgtaaccgagctcatcctccagcaccagaaccctcag
cagctctctgccaacctctgggcagcggtgagggcgcggggctgccagttcctgggtcct
gctatgcaagaagacgctctgaaactagttttactggctctggaggacggctcagctttg
tccaggaaggtgttagttttgtttgtagttcaaaagctcgaggctcgcttcccccaggcc
tccaaaaccagcatagggcacgtggtgcagcttctctacagggcctcctgcttcaaggtg
actaagcgggatgaagactcctcgctgatgcagctgaaagaagagttccgaacgtacgag
gctctccggagagaacatgacgctcagatcgtccacatcgccatggaggcgggactacgg
atttcccccgagcagtggtcctctctgttgtacggagacttggtccataaatcacatatg
cagtccattatagacaagttgcagtctccggagtcgtttgcaaagagcgttcaggaactg
acgatcgtacttcagaggacaggggaccccgccaacctcacaagccttagaccgcaccta
gagctgctcgccaacatagaccacaacccagatgtcccggcaccatcatgggaggagctg
gaaagtgtgatgctagctgtgaagttggtggtccatggacttgtggaattcatacagaac
ttcagcaaaaagagccatgacactccacagcctcaggccaacagcaagtacaagaccagc
atgtgcagagacctccgtcagcagggaggctgtcccagaggaaccaactgtacttttgca
cacacacaggatgaactggagaaattcagactgagaaacaagaagagcatcagcgctggc
cgtgcattccctttgtctccaggggttatgggtaaaaccttcaccatggagggcggcatc
cacgaggaattgtctgcaggcgtggggcaagggctccaagacacaggggaggacatggcc
tccctgacagagggggtgccctgcctgactcacccacaactgatctccagaggggctgac
atgatggaggaaataaagagggcggtgccaaatggatccaatggggctaatgggtccaac
gggctatccagcagaaacacggggtcaactgaaaagaagcccatctcccctcccaggact
ccggtcagccactcctcagcgtcatctcccttgacaacagcaggggggcggggtgatggt
ggcgattctatgcccaaacatggtcagtttgtgctgcgcgcatcacatccttctcaggcg
tcagagctgtactatcaggagccccactctgcatatgacacgccacattatcaaccaacc
tcaggttcctactaccaatcctctctccatcctcctcacaaaccctgcatggctcgcttc
cttcgatcctccaacgtcccagaatcctctctcccgccctcgattggccctccgccatct
tcctacccaaatgacccacatgcaccacacccaccttcctcctcctcttcgggcttccct
ccccgagataggatgggacctcctgccttccaccaccacccggggcagcctcagtacggc
cctctggctcctgctcacggtgtttatgctccgctctacgacagcaggagagtctggagg
cctcagctgtaccacagggaggatgccaggagcaactcgctgcctccggaagtgctgcat
tcctccgtctaccagcctccactcagggagagattcaactctctcgacagcaactactgc
tccggaagtgaacaccgtgcagggctacacagggattatggccgcgttcctctcggttac
gaggatttgttcaggaggaagcaggaacagtgggctcatcatcatcaccatcataacgcc
aacaggccctcccagtcctcccccatcttcaccatcgattttggtacagagcatgtggag
ggcagcggaggtcagtgcatggggtgccggttcagaggcgaggagagtttagcccactac
tccccgtggtcctgcggtaccatcggcacctgccttagcccctttgagcctgaaacactc
gcacacacatcggctcactcctgctcagagcactcggagttggacagtaacggaggtgga
ggaggtggtgtgagcagtagtggtgtcgggaaaagatggctgcattcgttggatcattat
cggcgcatgaaagacgaggacccgatcattccctttagtgaggggcccattatctcaaag
tggggggccatatccagagcatctcgcacgggctaccacaccaccgaccccatccaagcc
acggcctgccaggggagtgccaacaccacacccatcaactttaaagattacaaccactac
ctggatcacagcgactacaggtggagctccagaggatcggactcttccagccactccagt
ttcctagagagcgagcagctttgtgcatcagatcttcactgccgtcgaacgtccattagc
agtggagagaaaatcgcgtccgaccttcaggcacgtcagttcgcctacagccgggagcgt
ggccgggccgagagcgaaccggacccggagcgagacatcgagctcgaactctgcgctcta
gacatggaggattcagagatcaagtctcaggagtctttagacctggccgccctacagtct
caggatgcttcccacttcctccctccaccctgctcctctcctctcctctcttctcctgtg
gaggagcactcccaaacagaaggtcctctgactgaaaatatggacactcacctgctgaaa
aagatggccttcaggaagtctttatctcctggaggctttgtctcaggaggtcttggcgtt
ggcaagctagtcctgcggactggatctcctcgactgggggacacttccacccgggcttgt
cctgagacacccgggacagaaatgctgctcaatagaagctaa
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