Pseudochaenichthys georgianus (South Georgia icefish): 117456008
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Entry
117456008 CDS
T09629
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117456008 (vldlr)
Membrane trafficking [BR:
pgeo04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
117456008 (vldlr)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Motif
Other DBs
NCBI-GeneID:
117456008
NCBI-ProteinID:
XP_033951601
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All DBs
Position
12:complement(2674203..2711069)
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AA seq
861 aa
AA seq
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MVTYTPGVLLLLTCLQHCMHVHGTKTECEASQFQCGNGRCIPSVWQCDGDEDCTDGSDEN
SCVRKTCVEVDFVCRNGQCVPKRWHCDGEPDCEDGSDESVEICHMRTCRVNEFSCGAGST
QCIPTFWKCDGEKDCDNGEDEVNCGNITCAPNEFTCSSSRCISRNFVCNGEDDCGDGSDE
VECAPSSCGPSEFQCGNSSCIPASWVCDDDVDCQDQSDESPARCGRHPTPPAKCSSSEMQ
CRSGECIHKKWRCDGDPDCKDGSDEANCPVRTCGSDQFKCDDGTCVLGSRQCNGLRDCAD
GSDEVNCKNMTQCNGPEKFKCRSGDCIEMSKVCNKARDCPDWSDEPIKECNLNECLLNNG
GCSHICKDMVISFECDCTPGLQLIDHKTCGDINECMNPGICSQICINLKGGYKCECHNGY
QMDPTTGVCKAVGKEPCLIFTNRRDIRRLGLERKEYTQIVEQQRNAVALDADFGQQLIFW
ADLGHRAIYSTVLDKRGDVGTHNKVIDNLQTPVGVAVDWIYKNLYWTDLGSKTISVSNFN
GTKQKVLFNKGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGADRQVLVGTDIQWPN
GITLDLIKGRLYWVDSKLHMLCSVDLNGDNRKKVLQSSEYLAHPFALTVFEDRVFWTDGE
NEAIYCANKFTGADVVTLASNLNDPQDIIVYHELIQLSGANWCVEKGENGGCSYMCLPAP
QINKHSAKYTCVCPDGQELAADGLRCKPDHSAKGHSKDDGKARTRPPSEANVSTSIQVNA
TARGSAAAWAILPVLLLAMAAAGGYLMWRNWQLRNQKSMNFDNPVYLKTTEEDLNIDITR
HGANVGHTYPAISIVSTEDDL
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggtgacttatacaccgggagtccttctgctgctgacatgtctccagcactgcatgcac
gtccacggtacgaagacggaatgtgaggccagccagtttcagtgtgggaacggccgctgc
atcccgtccgtctggcagtgcgatggagacgaggactgcaccgacggcagtgacgagaac
tcctgtgtcagaaagacgtgtgtggaggtggacttcgtgtgtcgcaacggccaatgtgtc
ccgaagcgatggcattgcgacggagagccggactgcgaggacgggtccgacgagagcgta
gaaatctgccacatgcggacgtgtcgtgtgaacgagttcagctgcggagcgggctccact
cagtgtatccccaccttctggaaatgtgacggagagaaggactgcgacaatggagaggac
gaagtcaactgtggtaacatcacctgcgctccaaacgagttcacctgctccagcagtcgc
tgcatctcccgtaactttgtgtgcaacggcgaggacgactgcggcgacggctcggacgag
gtggagtgcgcgccgtcctcctgcggccccagcgagttccagtgtggaaactcctcgtgc
atcccggccagctgggtgtgcgacgacgacgtggactgccaggatcaatccgacgagtct
cccgcccgctgcggccgccacccgacgccgcccgccaagtgttcgtccagcgagatgcag
tgccgctcaggggagtgcatccacaagaagtggaggtgtgatggagaccccgactgcaaa
gacggcagcgacgaagccaactgtcctgtacggacgtgcggatcggatcagttcaaatgt
gacgatggaacgtgtgtcctgggcagcaggcagtgcaacggcctccgagactgcgctgac
ggttcagacgaggtcaactgcaaaaacatgactcagtgtaacggaccagagaagttcaag
tgtcgcagcggggactgtatcgagatgagcaaagtgtgcaacaaagcccgagactgtccc
gactggagcgacgaacccatcaaagaatgcaacctcaacgagtgcctcctgaacaacggc
ggctgctctcacatctgcaaagacatggtgatcagcttcgagtgcgactgcacgcctgga
cttcagctcatcgaccacaagacctgcggagacatcaacgagtgcatgaaccccggcatc
tgcagtcagatctgtatcaacctgaagggcggctacaagtgcgagtgccacaacggctac
cagatggatcccactaccggagtctgcaaggctgttggtaaggagccctgcctgatcttc
actaaccgcagagacatccgccgcctcggcctggagaggaaggagtacactcagatcgtg
gagcagcagaggaacgccgtggctctggatgctgactttggccagcagctgatcttctgg
gctgacctgggccacagggccatttatagcacggtgctggacaagcggggggacgtcggc
actcacaacaaagtgatcgacaacctccagactcctgtgggcgtcgctgtggactggatc
tataagaacttgtactggactgatctcggcagcaaaaccatttctgtttccaacttcaac
ggaaccaagcagaaggttctgttcaacaaaggcctcaaagaaccagcatccatcgccgtg
gatcccctgtccgggtttctgtactggtctgactggggcgaaccggccaagatcgagaag
tctgggatgaacggagctgacaggcaggttctggtggggacggacatccagtggccgaat
ggaatcactctggatctgatcaaaggcaggctgtactgggtcgactcgaagctgcacatg
ctctgtagcgtggatctgaacggagacaacaggaagaaagtgctccagtcttcagagtac
ctggctcatcccttcgcgctcactgtgtttgaggatcgggtgttctggacagacggtgag
aatgaagccatctactgcgcaaacaagttcactggcgccgacgtggtgacgctcgccagc
aacctgaacgacccgcaggacatcatcgtgtaccacgagctgatccagctgtcgggtgct
aactggtgtgtggagaaaggtgagaacgggggctgcagctacatgtgtcttcccgcgccg
cagatcaacaagcactctgccaaatacacgtgtgtgtgccccgacggacaggagctggcc
gctgacggtctacgctgcaagcccgaccattctgccaaaggtcactcaaaggatgatggg
aaagctcgaacacgaccaccctcagaagccaacgtgagcacgtcgatccaggtgaacgcc
acagcaagagggtcagctgctgcctgggccatactgccagtcttgctgctggcgatggcc
gcggccgggggatacctgatgtggagaaactggcagctgaggaaccagaagagcatgaac
tttgacaaccccgtctatctcaagaccacagaagaagacctcaacatcgacatcacccgg
cacggcgccaacgtgggtcacacctaccctgcgatttccatcgtgagcacagaggacgat
ttatga
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