Pseudochaenichthys georgianus (South Georgia icefish): 117456065
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Entry
117456065 CDS
T09629
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117456065 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
117456065 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
117456065 (pdlim5b)
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PilX
PDZ_2
Motif
Other DBs
NCBI-GeneID:
117456065
NCBI-ProteinID:
XP_033951683
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Position
12:complement(17524591..17568464)
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AA seq
619 aa
AA seq
DB search
MSSSYSVSLAGPAPWGFRLQGGKDFCLPLTISRLNDGGKAAKANMTVGDIIMSINGISTD
RMNHLEAQNKIKACTGNLSLTLQRPSSAPQDGVTKEEPREIIKPVPITHPAPSTAYTKPS
SQPGPAYNKTARPFGGDSSIVVTAPSPAAPSIPSPSSAFKPAAPSQLPQPPFLLKSSLPA
PDSAPANSVTRPSPVRSAFTSPSASSSSSNSSSPARVTAPPSHPNVPQPSVYNTPIHLYS
NTNACEVAVGQRRGLLESQGLSENFNGLPPPTKPRRKVNVEPEDHAHASQLSDASRKRLM
EDTEDWHPRSGTSQSRSFRILAQLTGTENEQAPENGGKNEAVDKSTPAVHTLPAAKTFSK
SAASPRNGNGVPASTFKSPAAQNKPSFQPGGFPKGGAAPSFGKVTNPTPKGPDRPIPQPH
PQDLNCLVQRAEHIPAGTRTPMCNQCNTVIRGPFLVAMGMSWHPEEFNCAHCHSSLAVGG
FVEEKGQVYCERCYEQFLAPTCGHCQQKILGEVMNALKQTWHVSCFVCAACQQPIRGNTF
HMEDGQPYCEKDYYNLFGSNCHGCDFPIEAGDKFLEALGSTWHDTCFVCAVCSASLEGQA
FFSKKDKPLCKKHAHTVNI
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagctacagcgtctccctggctggccccgccccctggggcttcagactgcaa
ggagggaaggacttctgtctccccctcaccatctcacggcttaatgatggaggcaaggca
gcgaaagccaacatgacggtcggagacatcatcatgtccattaacggcatttccacggac
cgcatgaatcacctcgaggcccagaacaagattaaggcctgcacgggcaatctcagcctc
acactgcagagacccagcagtgcccctcaagatggagtcactaaggaagagcctcgggaa
atcataaagcctgtcccaatcactcaccctgccccaagcacggcatacaccaagccctcc
agtcagcccggccctgcgtacaacaagaccgcccggccttttgggggcgacagcagcatt
gtggtcacagccccctccccggctgccccctccatcccctcaccatcatctgctttcaag
ccagctgctccttctcaactgccacagcctccatttctgctgaagtccagcctgcctgcc
ccggactcagctccagccaattcggtcaccaggcccagccctgttcgctccgccttcacc
tccccatctgcctcttcctcctcatctaactcctcctctccagccagagtgacagccccc
ccctcccatcctaatgtcccacagccctccgtctataacactccgatccacctctactcc
aataccaatgcatgtgaggtggctgttggacagagacgcggtcttttggagagccagggg
ctgtcagagaacttcaatggacttccacctccaactaaacctaggaggaaggttaatgtg
gagcctgaggaccatgcgcatgcgtctcagctgagtgatgccagcaggaagcgtctgatg
gaggacacggaggactggcacccccgaagcggcacctcccagtcccgctccttccgcatc
ctggcccagctcaccggcactgaaaatgagcaagctccagagaacggtggaaagaatgag
gcagttgacaaaagcactcccgctgtgcacaccttgcctgcagccaaaacattttccaaa
tctgcagcctcacccaggaatggcaacggggtccctgcttccacgttcaagagcccagcc
gcccagaacaagccttccttccagcctggaggttttcctaagggtggagcagctccttca
tttggcaaagttaccaaccctactcccaaaggtccagatcgccccatccctcagccacac
ccacaggacctcaactgtctggtgcaacgggccgagcacatcccagccgggacacgcact
cccatgtgcaaccaatgtaacactgtcatcaggggcccattcctcgtggcaatgggcatg
tcatggcacccggaggaattcaactgtgctcactgccactcctctctggcagtggggggg
tttgtggaggagaagggccaggtgtactgcgaacgttgctacgagcagttcctcgctccc
acctgtggccactgccaacagaagatcctgggggaagtcatgaatgccctgaaacagacc
tggcacgtgtcctgtttcgtctgtgccgcctgccaacagccaatcaggggcaacacattt
cacatggaggacgggcagccatactgtgaaaaagactactataacctctttgggtcaaac
tgccacggatgtgacttccccatcgaggcgggggacaagttcctggaggctctaggatcc
acctggcatgacacctgctttgtgtgcgcggtctgctctgctagtctggaaggtcaggcg
ttcttctccaaaaaagacaagcctttgtgcaagaaacacgcccacacagtcaacatctga
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