KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117456230
Entry
117456230         CDS       T09629                                 
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03082  ATP-dependent chromatin remodeling
pgeo03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    117456230
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    117456230
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pgeo01009]
    117456230
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pgeo03021]
    117456230
   03036 Chromosome and associated proteins [BR:pgeo03036]
    117456230
Protein phosphatases and associated proteins [BR:pgeo01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     117456230
Transcription machinery [BR:pgeo03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     117456230
    SWI/SNF complex
     117456230
Chromosome and associated proteins [BR:pgeo03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    117456230
   PBAF complex
    117456230
   SWI/SNF complex
    117456230
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd
Other DBs
NCBI-GeneID: 117456230
NCBI-ProteinID: XP_033951927
LinkDB
Position
12:complement(28895299..28909880)
AA seq 368 aa
MQLALSKTFGQKPVKFQLEEDGDFYMVGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERK
KIVASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKGKRSSQWVPTLPN
SSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAAQVEALVPIRLDMEIDG
QKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPNDGILEEQ
QDQRVIIKLNIHVGNISLVDQFEWDMSERENSPESFALKLCSELGLGGEFVTTIAYSIRG
QISWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR
LANTAPSW
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgcaactggctctaagtaaaacgtttggccagaaaccagttaaatttcaattagaagaa
gatggagatttttacatggttgggtcagaggttggaaactacctgcgtatgttcagagga
tctctgtataagagatacccatctttatggaggaggctggcctcagtggaggagaggaag
aagatcgtagcatcgtcacacgccaccagtgtcactctgctgaaggcatcagagtgtgag
gagatctttgaggggaatgatgagaaatacaaggcggtgtccatcagcacagagcccccg
gcgtacctcagagagcagaagggcaagaggagcagtcagtgggtgcccaccctgcccaac
agctcccaccacctggatgctgtgccctgctccaccaccatcaaccgcaaccgcatgggc
cgggacaagaagaggaccttccccctgtgctttgatgaccacgaccccgcagtgatccat
gagaacgcagcgcaggtggaggcgctggttcccatccggctggacatggaaatcgatgga
cagaaactgagagatgccttcacttggaacatgaatgagaagctgatgaccccggagatg
tttgcagagatcttgtgtgatgacctggacctgaatcctctggccttcgtccccgccatc
gcctccgccatccgtcagcagatcgagtcgtaccccaacgacggcatcctggaggagcag
caggaccagagggtcatcatcaaactgaacatacacgtggggaacatttctctggtggac
cagtttgagtgggacatgtctgagagagagaactcccccgagtccttcgccctgaagctg
tgctctgagctgggtctggggggggaatttgttaccaccatcgcctacagcatccgcggt
cagatcagctggcaccagaggacctacgccttcagtgagaaccccctcccgacagtagag
atagccatccgcaacacaggagatgcagaccagtggtgccccctgctggagaccctcaca
gacgctgagatggagaagaagatccgagaccaggacaggaataccaggcgtatgagaaga
ctggccaacaccgctccgtcctggtag

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