Pseudochaenichthys georgianus (South Georgia icefish): 117456323
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Entry
117456323 CDS
T09629
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoporin p54-like
KO
K14308
nuclear pore complex protein Nup54
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117456323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117456323
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117456323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
117456323
NCBI-ProteinID:
XP_071061114
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All DBs
Position
12:19224046..19241690
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AA seq
542 aa
AA seq
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MASSPDSHTLTELSRTLQVSVPSQALTAPGFGAAPTAAAAPATGFSFGSTNTGTFGGFGA
AATTAPAPGSTFSFSTPANTTGGLFGNTQNKGFGFSSXLGTAAPAGATRFGTGLGTTTLG
GFGGFNIQPTQQQTGGLFGQQAQQQAQAQTTQLYQXPLSAPTLLGDERDTILAKWNQLQA
YWGTGKGYYSNNNQPVDFTQENPFCRLKAVGYSCVPVSKDEDGLVALLLNKKEADVRAQQ
QQLVETLHKVLGSNQSVTVNVDGVKALPNDQTEVVIYVVERSPNGTSKRIPATTLFSYLE
QGNIKAQLASIGVAMSGTRTELSPAQLKQLLQNAPAGVDPIIWEQAKVDNPEPDKLIPVP
MVGFKELLRRLQFQEQMTKQHQTRVDIISGDISELQKNQATTVAKIAQYKRKLMDLSHRV
LQVLIKQEIQRKSGYAIQVDEEHLRVQLDTIQSELNAPTQFKGRLNELMSQIRMQNHFGA
VRSEERYSVDADLLREIKQHLKQQQDGLSHLISVIKDDLEDIKLIEHGLSDSGHYMRGSI
LS
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctctcctgacagccatacactcaccgagctcagtagaaccctccaagtctcc
gttcccagccaagctcttacagctcctggttttggggcagcccccaccgctgctgctgca
ccagccacaggattcagttttggctccaccaacactggtacgtttggtggctttggggca
gctgcaacaactgcacctgcaccaggatccacctttagctttagtactcctgccaacacc
acaggaggcctgtttggtaacacacagaacaaaggttttgggttctcctctncgcttggt
accgcggctcctgctggggcaacaagatttggaactggattaggaacaacaaccctggga
gggtttggaggttttaatatccagcccactcagcagcagacaggaggcttgttcggtcag
caggcccagcagcaggctcaggctcagaccacccagctgtaccagnngcctctgtcagcc
cccaccttgttaggagacgaacgtgacaccatcttagccaaatggaaccagttgcaggct
tactggggaactgggaagggctactacagcaacaacaaccaacctgtcgacttcacgcag
gagaacccattctgcaggttaaaggcggtgggctatagctgtgtcccagtgagtaaggat
gaggacggtttagtggccttacttctcaataaaaaggaagctgatgtgcgagcgcagcag
cagcagctggtggagactcttcacaaagtcctgggaagcaaccagtctgtcactgtcaat
gtggatggtgtcaaagccctgcccaatgaccagactgaggtggtcatttacgtggtggag
cgttctcctaatggcacctccaagcggatccctgccaccacactcttcagttatctggag
cagggcaacatcaaggcccagctcgcatcgatcggagtggccatgtcggggacgcgcaca
gagctgtctccagctcagctcaaacagctgctgcagaatgcacctgcaggagtggacccc
atcatttgggagcaggctaaggtggacaaccctgagccagacaaactaataccagtgccc
atggtgggtttcaaggagctccttcgcaggctgcagttccaggagcagatgaccaaacag
caccagaccagagtggatattatttccggtgacattagtgaactgcagaagaaccaggcg
acaacagtggccaagattgcgcagtacaagaggaagctgatggatctctctcacagggtg
ctgcaggtgctgatcaaacaggagatccagagaaaaagtggctatgctatccaagtggac
gaggagcatctcagagttcaactggataccattcagtctgagctgaatgcgcccacgcag
ttcaagggtcggttgaatgaattaatgtctcagatcaggatgcagaatcactttggagct
gtgagatcagaagagcgatacagtgttgatgcagacctcctcagggaaatcaaacaacac
ttaaagcagcagcaggatgggttgagtcatttgatcagtgtcatcaaagatgacttggag
gacattaaactcatagagcacggcctgagtgacagtggacactacatgagaggaagcatc
ctgagctga
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