Pseudochaenichthys georgianus (South Georgia icefish): 117456366
Help
Entry
117456366 CDS
T09629
Symbol
tnpo1
Name
(RefSeq) transportin-1 isoform X5
KO
K18752
transportin-1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117456366 (tnpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117456366 (tnpo1)
03009 Ribosome biogenesis [BR:
pgeo03009
]
117456366 (tnpo1)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117456366 (tnpo1)
Ribosome biogenesis [BR:
pgeo03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
117456366 (tnpo1)
Pre-60S particles
117456366 (tnpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
TPR_IMB1
HEAT_GCN1
HEAT_2
Arm
Vac14_Fab1_bd
IBN_N
TOR1L1_N
Cnd1
TPR_IPO5
HEAT_EF3_N
TPR_DNAAF5
HEAT_MROH2B_C
PDS5
Adaptin_N
HEAT_GCN1_C
CEP104-like_TOG
HEAT_MROH2B_1st
MMS19_C
UNC45-central
HEAT_GCN1_C_2
Dopey_N
HEAT_DAAF5
VPS15-like_hel
RTP1_C1
RXT2_N
Motif
Other DBs
NCBI-GeneID:
117456366
NCBI-ProteinID:
XP_033952110
LinkDB
All DBs
Position
12:complement(25782783..25817646)
Genome browser
AA seq
891 aa
AA seq
DB search
MECEWKPDEQGLQQILQLLKESQSPDTSTQRSVQQRLEQLNQYPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHYQNFPNGVSDFIKSECLQNIGDSSPLIRATVGILITTIASK
GELQNWLELLPKLCLLLDSEDYNTCEGAFGALQKICEDSAEILDSDLLDRPLNIMIPKFL
QFFKHNSPKIRSHAIACVNQFIISRTQALMLHIDPFIENLFALATDEEPEVRKNVCRALV
MLLEVRLDRLLPHMLNIIEYMLLRTQDQDENVALEACEFWLTLAEQPVCKEVLCGHLSQL
TPVLVNGMKYSEIDIILLKGDTEEDEAIPDNEQDIRPRFHRSRTVAQQHEEDGIEDDDDE
DDELDDDDDTISDWNLRKCSAAALDVLANVFREDLLQPILPLLKELLFHPEWVVKESGIL
VLGAIAEGCMQGMIPYLPELIPHLVQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK
PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAFILDTLVFAFSKYQHKNLL
ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIAKWNQLKDEDKDLFPLLECLSSVATALQS
GFLPYCEPVYQRCVNLVQKTLAQAMLYQSQPDQYEAPDKDFMIVALDLLSGLAEGLGGTI
EELVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP
ELISVCNNATWAIGEISIQMGSDMQPYIAMVLHQLVEIINRPNTPKTLLENTAITIGRLG
YVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPGGVVQDFIFFCDAV
ASWVNPKDDLRDMFYKILHGFKNQVGEDNWRRFSDQFPLPLKERLATFYGV
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtgagtggaaaccagacgagcaaggacttcaacaaattctacagctgctgaaa
gagtcccagtcaccagatacctccacacagagatccgtccagcaaagactcgagcagctg
aaccagtatcccgattttaacaactatttgatatttgttctgactaagttaaaatcggaa
gatgaacccacgcggtccctgagtgggctgatactgaagaacaatgtgaaagcccactat
cagaacttccctaatggcgtgtctgatttcatcaagagcgagtgcctccagaacatcgga
gactcgtctcctctcatccgggccaccgtgggtatcctcatcaccaccatcgcctcaaag
ggagagctacaaaactggctggagcttttacctaaactctgcctgctgctggattctgag
gactacaacacatgtgagggagcgtttggagccctgcagaagatctgcgaggactctgct
gagattttggacagtgacctcctggatcgtcctctcaacatcatgatccccaagttcttg
cagttttttaagcacaacagtccgaagattaggtctcatgccattgcctgcgtgaatcag
ttcatcatcagccggactcaggcgctcatgctgcacatcgaccccttcattgagaacctg
tttgcgctggcgaccgatgaggaaccggaggtgaggaagaatgtgtgcagagctttagtc
atgctgctggaagtccgtctggaccgcctcctgccacacatgctcaacatcatagagtac
atgctactgaggactcaggaccaagatgagaatgtcgccttggaggcctgtgagttctgg
cttactctggcagagcagcctgtgtgtaaggaagtgctgtgtggacacctctctcagctc
actccggtgcttgtcaatgggatgaaatactccgagattgacataatcctgctcaagggg
gacacggaggaagatgaggctattcccgacaacgagcaggacatcaggccgcgcttccat
cgctcccgcacagtcgcccagcagcatgaggaagacgggatcgaggatgacgacgatgag
gatgatgagctggatgatgatgacgacaccatctctgattggaacctgcgcaagtgttcg
gctgcagcgctggacgtgttggccaacgtgttcagggaggacctgctgcagcccatcctg
cccctcctcaaagagctgctcttccatccagagtgggtggtcaaagagtctggcatccta
gtgctgggggctatagctgaaggctgtatgcagggcatgatcccgtacctgcccgagctc
atcccccatctggtccagtgtttgtctgacaagaaggccctggtgcggtccatcacctgc
tggacactgagccgctatgcccactgggtggtcagccagcccccagatacttacctgaaa
cctctaatgacggagctgctcaaacgcatcctggatagcaacaagcgtgtgcaggaggcg
gcgtgcagtgcctttgccactctggaggaagaggcttgcacagagctggtgccctacctg
gcgttcatcctcgacaccctggtgttcgctttcagcaagtaccagcacaaaaacctgctc
attctttacgacgccatcggcaccctggcagactccgtggggcaccatctcaataaaccg
gaatacatccagatgttgatgcctccactgatcgcaaagtggaaccagctgaaagatgaa
gacaaagatctcttcccgttattagaatgtctgtcgtctgtagccacggccctgcagagc
ggcttcctgccctactgcgagcctgtgtaccaacgctgtgtcaacctggtgcagaagacc
ctcgctcaagccatgctttatcagtcacagccggaccagtatgaggctccagacaaagac
ttcatgatcgtggctctggatctcctcagtgggctggctgagggcttgggaggcaccata
gaggagctggttgctcggagcaacatcctcacccttatgtaccagtgcatgcaggacaaa
atgccagaagtgcgtcagagttcttttgctctgctcggggatttaaccaaggcttgtttc
caacacgtcaaaccatgcatcgctgattttatgcccatactgggtactaatttaaaccca
gaattaatatcagtgtgcaacaacgcaacatgggcaatcggagagatatctatacaaatg
ggctctgacatgcagccgtacattgccatggtgctgcaccagctggtggagatcattaac
aggcccaacaccccaaagaccctgctggagaacacagcaataacaattggtcgtcttggt
tacgtttgtcctcaagaggtggcacccatgctacagcagtttataagaccctggtgcacc
tctctgcgaaacataagagacaatgaggagaaggactctgcgttcagagggatctgcact
atgatcagtgtgaatccaggaggtgtagtgcaggactttatattcttctgtgacgcagtg
gcctcctgggtaaatccaaaggacgacctaagagacatgttttacaagatccttcacggc
ttcaagaaccaggtgggcgaggacaactggagacgcttctcagatcagttccccctgcca
ctgaaggaacgcctggcaaccttttacggggtgtaa
DBGET
integrated database retrieval system
