Pseudochaenichthys georgianus (South Georgia icefish): 117456415
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Entry
117456415 CDS
T09629
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117456415 (taf1c)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
117456415 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
117456415
NCBI-ProteinID:
XP_033952190
LinkDB
All DBs
Position
12:complement(1731574..1746527)
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AA seq
1069 aa
AA seq
DB search
MTNTMDYQFPEQLYPSFYNCGPPDLVLKHCAGNWGCYDGVRPQGGSGPLSSWTFTSRHQV
RGETWRHTEPAPVPLLPPKNSVLWPSTPPDPQDFPEHMQNFFMDHCQDAFGSMSEILNED
LIFKQGTKKMSRIDSVYMRKMESLIKKGKLKKRPLSFPSKVLNAYGSMLSDVLPAVPPAL
LGSLLFEELNEQRERMLFSEAATGGAMAFVPFSQSSSDSQSGCLLYPGNQGLDCLNFQRV
ELQQHRGTAPCVNTISSDLWSFQLKAPVRQISTVSLINNCCVAVRSDHLCGVWRFSEGDK
PQLMEVVNTKEVATCISVSPHVLGEVLVASESGAVDLWTVGRGMQRVREEGENLYFNAKS
SWRWCEFSAHPRVMVYADRTGVELTDIRVSPVSNHTLFRISNTAECRSGERLILSRYLAD
IHPFHHLITTQHSAYIMDERFPCVHMLKWDHMMQSPPMFCHTFPGSASSRTAKVLLGSHS
SQEITLLQYSGGKAEACSSRGPPQALLRPRDSLRHLPVQLPHRLELATSRLSSPAAGLTC
IQKRGGGEECICVLQLTEAGDIFYQILEPEQSHTPPPALEKNTISEINPAQQPPPSLRLI
SEASSDEDIIGPTQTQSFVAETQEEERPELDTYASSNESWSPRKSRRMKNVQLQVIVNDY
DNDETVSGLDTGLNEETVREEKADIPEEPSRVEETTSGSQKLSDGVLLTWKQWLQKLMQK
SHKNKPRPQRRQPFKITTKELIDLSSDDEARGEDSAEKERVENVRRDLRACMANRSLLVH
SAVSASLGAQEVVEVPDAVKTDGWGDPTSERFTISWQGEGAWQAWWAENLGLNREKKVEA
LRRKRRREKEVRRASSQRSVLSSSFCSSLSYQSDLSDFSDLSGWSSSASLGAWSDSGGGL
SQAEGSVGRGIPRAATPSSSQTDPTPQPGNQTLTSQPGNQTLTSQPGNQTLTSQPGNQTP
SRTNAPPNTPKPLDSTPATVRRSKPQEDYLSALFAPQDDASQHGGYFLEEESPVLHAPPP
VASSSSQSASLRSVRTGFSQSLTPSQSSQGRPGLSQAPLAKKKKPRMGF
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatacaatggattaccagttcccagagcaactttacccttcgttttacaactgt
ggacctccagacttggtcctgaaacactgtgcaggaaactggggctgctacgacggagtc
cgacctcagggtggctctggtcctctctccagctggacctttacctccaggcatcaggtc
agaggggagacatggcgtcacacagagccagcaccagttcccctcctgccccccaaaaac
tctgtcctctggccttcgacgcctccagatccgcaggatttcccagaacatatgcagaac
ttcttcatggaccactgccaggacgccttcgggagcatgagcgaaattctgaatgaagac
ttaatcttcaaacaaggaacgaaaaagatgtctcgcattgactccgtctacatgaggaaa
atggaaagcctcatcaaaaaggggaagttgaaaaagcgtccgttgtcatttccgtccaag
gtgctgaacgcgtacggctccatgctgtcggacgtgttgcccgccgtgccccccgccctg
ctgggctccctgctgttcgaggagctgaatgagcagagggagcgcatgctgttctccgaa
gcagccacagggggcgctatggccttcgtccctttctcacagagcagcagcgactctcag
agcggctgcctcctctaccccgggaaccaggggctggactgcctcaacttccagagagtg
gagctgcagcagcacagagggaccgccccctgtgtgaacaccattagctctgatctgtgg
agcttccagctgaaggcccccgtcagacagatcagcaccgtctcacttatcaacaactgt
tgtgtggccgtgcgctcggaccacctgtgtggagtctggaggttcagtgaaggagacaag
cctcagctgatggaagtggtcaacaccaaagaggtcgccacctgcatcagtgtcagtcct
catgttctaggggaagttctggtggcgagcgagagcggagcggtagacctgtggaccgtc
ggcagagggatgcagagggttcgggaggagggggaaaacctgtacttcaacgccaagtcg
tcatggcgatggtgcgagttctccgcccaccccagggtgatggtgtatgcagacaggacg
ggggtggagctcactgacatcagggtgagtcctgtctcaaatcacactctgtttcgtatc
agcaacaccgccgaatgtcgcagtggagagagactcatcctgtccagatacctggcagac
atccaccccttccaccacctcatcaccacgcagcactcggcctacatcatggacgagcgt
ttcccctgcgtgcacatgctcaagtgggatcacatgatgcagtctccaccaatgttctgt
cacactttccctggctccgcctcctcccggaccgccaaggttctgctgggctcccacagc
tctcaggagatcaccctgctgcagtactcaggggggaaagccgaagcctgttccagtcgg
ggtcctcctcaggcgctgctcagacccagagacagcctgagacaccttcctgtccaactc
cctcaccgcctggagctggccaccagcagactctcctcaccggcagcaggtctgacttgt
atccagaagagaggagggggcgaggagtgtatctgtgtcctccagctgaccgaggcgggg
gatattttctaccagatcctggagcccgagcagtcgcacacccctccaccagctctggag
aaaaacaccatttcagagataaatccagcccaacaaccaccaccgtctttgaggctcata
tcggaagcatcgagcgacgaagacataatcggcccgactcagacgcagagctttgtggct
gaaacacaggaggaagaacggccagaactggacacgtacgcctcctcgaacgagtcctgg
tccccaagaaagtcccgccgcatgaagaatgtgcagctgcaggtcatcgtcaatgactac
gacaatgatgaaaccgtgagtggactggacacgggtttgaacgaggaaaccgtgagagaa
gaaaaagctgatattccagaggaacccagccgcgtggaggaaacgacgagcggcagccag
aagctcagcgacggcgttctgctcacatggaaacagtggctgcagaaattgatgcaaaag
agtcacaagaataagccccgcccacagcgcaggcagcccttcaaaatcacaactaaagaa
ctcatcgacttgtcgtctgacgatgaagcgagaggagaggattcggcggagaaggagcgc
gtggagaacgtgaggcgggacctcagagcgtgcatggccaaccgctcgctgctcgttcac
agcgccgtctccgcctccctcggagcccaggaggtggtggaggtgcccgacgcggtgaag
accgacggctggggggatccgacgagcgagcgcttcactatctcctggcagggggagggg
gcctggcaggcgtggtgggcggagaacctggggctgaacagggagaagaaggtggaggct
ctgaggaggaagaggaggagggagaaggaggtgaggagagcgtccagccagcgctcggtg
ctgtccagcagcttctgctcgtctctgagctaccagtcggacctgagcgacttctcggat
ctgtctgggtggtcctcgtccgccagtttgggggcgtggtccgacagcgggggggggctg
tcccaggcggaggggtctgtagggagggggatcccacgagctgcaacaccctcctccagt
caaacagaccccacgcctcaaccagggaaccagaccctcacttctcaaccagggaaccag
accctcacttctcaaccagggaaccagaccctcacttctcaaccagggaaccagaccccc
agcagaaccaacgcccccccaaacacacctaaacctctcgactccaccccggccactgtg
aggaggagcaaaccccaagaagactacctcagcgctctgttcgcaccgcaggacgatgcc
tcgcagcacggcggttatttcctggaggaagagagccccgtgctccacgctcctccaccc
gtggcctcgtcctcctcccagtccgcctctctgaggagcgtccggaccggtttctcccag
tccctcaccccctcccagagctcccaggggagaccggggctgtcccaggcaccactcgcc
aagaagaaaaagcctcggatgggattctga
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