Pseudochaenichthys georgianus (South Georgia icefish): 117456468
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Entry
117456468 CDS
T09629
Symbol
col5a1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117456468 (col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pgeo00536
]
117456468 (col5a1)
Glycosaminoglycan binding proteins [BR:
pgeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117456468 (col5a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
117456468
NCBI-ProteinID:
XP_033952260
LinkDB
All DBs
Position
12:complement(24822667..24899453)
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AA seq
2067 aa
AA seq
DB search
MDTHIRWKVKRTIRDAQITLAVILLFVTSQASSAEPADLLKILDFHSLPEGVLKTTGLCS
HRRSTQGPDVAYRVSKDAQLSAPTQQLYPGDVFPEDFSILATVKPKKGSQSFLLSVYNEQ
GVQQLGLEVGRSPVFLYEDHTGKPSPEDYPLFRGVNLADGKWHRVAISVHKQTITLILDC
KKKTTQKLLRSPHPIIDTKGIVVFGTRILDEEVFEGDIQQLLIVGDHRAAYDYCEHYSPD
CEVPMPDQPQNQDPNTDEYNTEEDSYYYEYPYYEDTEGKPLESTSDAETIKEVKMADEDI
VVSEAEEALRPVGSKVTSITSSSSAGSSAGSSAGSLSSSTGTATAGGEAYGEETSPYESY
DGYGNYETYYDEATAAPDTDSSRRVTGGEVDLEAGGKIDLSSDSNIERRVTDGEGSSITM
TANKTSVATSVGDYGDDYNYGTDDAYSLGAEGDTTSTVHVSGGGGSSSSSDHVSGGGGSS
SSSVHVSGGGGSSSSSDHVGGGGGSSSSSDHVSGGGGGSSSSSDHVSGGGGGSSSSSDHV
SGGGGSSSSSVHVSGGGGGSSSSSDHVSAGGGGSSSSSTITIGGGSSSAGGSSTTGGGSA
SAGTGAGGSIATGTGLGVEGEGDYTDLDGFKEEHLSEYGDLDSYGTYNGLDYGDEGKVLP
AETGTDYGQVHGARGEKGQKGEPAVIEPGMLVEGPSGPEGPTGLPGPPGSSGQPGSSGDS
GERGLPGRAGLSGADGLPGPPGTVLMLPFRMSSGGDSGQKGPAVSAQESQMQAIMQQARM
AMRGPTGPMGLTGRSGVLGPPGGSGLKGESGDSGHQGPRGPLGTSGPSGKPGRRGRSGAD
GARGMPGQSGTKGDRGFDGLSGLPGEKGHRGESGPSGPHGGPGEDGERGDDGEIGPRGLP
GESGPRGLLGPKGPQGPSGPPGVTGMDGQPGPKGNIGPQGEPGPSGQQGNPGTMGLAGPQ
GAIGPPGDKGPFGKPGLPGMPGADGPPGHPGKEGPNGEKGHLGPAGPQGPLGYPGPRGVK
GADGVRGLKGHKGGKGEDGFPGFKGDLGIKGDRGELGPGGPRGEDGPEGPKGRSGLLGDS
GPLGPSGEKGKLGVPGLPGYPGRQGPKGSQGFQGFPGANGEKGARGLAGKSGPRGQRGPT
GPRGERGARGPTGKNGPKGTSGNDGPPGPLGERGLPGPQGPTGFPGPKGPPGPAGKDGLP
GHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGDRGHPGPPGPPGEQGLPGSAGKE
GAKGDSGPAGPLGKDGPPGLRGFPGERGLPGPVGAHGLKGSEGPHGPPGPAGSPGERGPA
GPAGPTGLPGRSGPQGPPGPSGEKGGPGEKGPQGPAGRDGIQGPVGLPGPGGPPGPPGED
GDKGELGESGQKGGKGDKGEHGPPGPTGPQGPVGAPGPAGSDGEPGPRGQQGLFGQKGDE
GSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPSGGI
GNPGSVGEKGAAGETGVPGLQGELGGPGPRGERGEKGEGGPAGTSGPPGPKGPPGDDGPK
GSPGPSGFPGDSGPPGEPGAAGLDGPAGDKGDDGEAGQAGSPGPTGESGPSGPPGKRGPH
GISGPEGRQGEKGTKGETGMEGPQGKTGPVGSQGSPGKPGSEGLRGIPGPVGEQGLPGSR
GPDGPPGPMGPPGLPGMKGDSGVKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPPGQHGSK
GDNGIAGPSGPLGPLGPPGLPGPSGPKGAKGSSGQTGPKGETGTSGPPGQPGPPGDVIHP
LPMMSNMKGRTRRNIDASEVMDDMPADTNYKDYEDGMEEIFGSLNSLKLEIEQMKHPMGT
QSNPARTCKDLQLCHPDFPDGEYWIDPNQGCSRDSFKVYCNFTAGGESCIFPDKKSEGAR
LTSWVKETPGSWFSEFKRGKLLSYVDAEGSPVSVVQMTFMRLLSAAARQNMTYNCYQSVA
WHDQEQDGYDKAIRFLGSNDEEMSYDNNPYIRAVVDGCALKKGYEKTVLEINTPKVEQVP
FVDIMFNDFGGSAQKFGFEVGPVCFIG
NT seq
6204 nt
NT seq
+upstream
nt +downstream
nt
atggatacccatataagatggaaagttaaacggacgataagggacgcccaaatcacttta
gcggtgattctgctttttgtcacatcgcaagcaagttcagcggaaccagccgacctcttg
aagattttagattttcacagtttacccgagggtgttctaaaaacaacgggtctctgctca
catcggcggtcaacacaaggacccgatgtcgcctacagagtctccaaagacgcccagctg
agcgcccccacccaacagctgtatccaggtgatgtgttcccggaggacttttccatcttg
gccacagtgaagccgaagaagggcagccagtccttcctgctgtccgtgtacaatgagcag
ggcgtccagcagctcggcctggaggtgggccgttctccggtgttcctgtacgaggaccac
acaggcaaacccagccccgaggactaccccctcttcagaggagtcaacctggctgacgga
aagtggcatcgagtggccatcagtgtgcacaagcagaccatcaccctcattctggactgt
aaaaagaagaccacccagaagctgctccgaagcccccaccccatcatcgataccaaggga
attgtagtttttggaactagaatacttgatgaagaagtcttcgagggagacatccagcag
ctattgattgtaggagaccatcgtgctgcctatgactactgtgagcactacagtcctgat
tgtgaagtgcccatgcccgaccagcctcagaaccaggaccccaacaccgatgaatataac
acagaggaggacagctactattacgagtacccttactatgaggacaccgagggaaagcct
cttgaatcaacatctgatgctgagacgataaaagaagtcaagatggcagatgaagacatc
gtggtgtctgaagcggaggaggctctgaggcccgtcggcagcaaagtgacctccatcacc
agcagctcatccgctggctcatccgctggctcatccgctggctcattatcaagctccaca
ggaactgccactgccggaggagaagcctacggagaggagaccagcccttacgaaagttac
gatggctacggtaactacgagacctactatgacgaggccacggcagccccagatacagac
tcctcccgacgggtcaccgggggcgaggtggacctggaggcagggggaaagattgacttg
agttcagactccaacatcgaaaggcgggtcaccgatggagaagggtcttcaatcaccatg
accgccaataagacatcagttgcaacttccgttggtgactatggtgatgattataattat
ggcaccgacgacgcttatagccttggtgcagaaggtgacaccaccagtaccgtccatgtc
agtggaggtggaggcagcagcagcagttcagaccatgtcagtggaggtggaggcagcagc
agcagttcagtccatgtcagtggtggtggaggcagcagcagcagttcagaccacgttgga
ggtggaggaggcagcagcagcagttcagaccatgtcagtggaggtggaggaggcagcagc
agcagttcagaccatgtcagtggaggtggaggaggcagcagcagcagttcagaccatgtc
agtggaggtggaggcagcagcagcagttcagtccatgttagcggaggtggaggaggcagc
agcagcagttcagaccatgtcagtgcaggtggaggaggcagcagcagcagttctaccatc
actatcgggggcgggtcttcctctgcggggggatcttccaccaccggagggggatcagcc
agcgccggcaccggagcagggggctccatcgccacgggaacaggcctgggtgttgaagga
gagggagactacacagacctggatgggttcaaggaggagcacctcagcgaatacggcgat
ttagactcgtacggcacctacaatgggctcgactatggagacgagggcaaagtgctgcct
gctgagaccgggacagattatggacaggtccacggagcccgtggcgagaagggacagaag
ggagagcctgctgttattgagcctggaatgttagtggagggcccgtctgggcctgaaggg
ccaacaggcctccccggacccccaggttcttctggccaaccaggcagttctggagattct
ggagagaggggtcttcctggtcgtgctggcctttccggtgctgatggtctgcccggaccc
cctggtactgtcctgatgctgcctttcagaatgagttctggtggcgactccggacagaag
ggccctgctgtgtcagcacaggagtcccagatgcaagccatcatgcagcaggctaggatg
gctatgcgcggccctacaggtcccatgggtttgactggcaggtccggcgttctgggtcct
cccgggggctcaggcctgaagggagagtctggagactcaggtcatcagggaccccgtgga
cccttgggaacctctggaccctctggaaagcccggcagaaggggtcgttctggagccgac
ggtgccaggggcatgccgggccagtctggaaccaagggagaccgaggctttgatggtctt
tccggacttcctggtgaaaaaggacacagaggtgaatctggaccctctggacctcatggt
ggtcctggagaggatggagaaaggggagatgatggagagatcgggccccggggacttcct
ggcgagtcagggccccgcggtttgctcggaccaaaaggacctcagggaccctctggaccc
cctggtgttactggaatggatggacaacctggacccaaaggaaacatcggacctcaagga
gaaccgggaccttctggacagcaaggaaacccaggaaccatgggtcttgcagggccccaa
ggagccatcggacccccaggagacaagggaccattcggaaaaccaggcttgccaggaatg
ccaggagctgacggcccaccgggtcaccctggaaaggaagggccgaacggagagaaagga
cacttgggccccgctggccctcaaggaccccttggttatcccgggccccgaggtgtgaag
ggagccgacggtgtccgcggtctgaaaggacacaagggtggaaagggagaagatgggttc
cccggcttcaagggagatttgggaatcaagggcgacaggggagagctcggcccaggagga
cccagaggagaggacggtcccgagggtcccaagggtcgctcaggtctcttaggagattct
ggtcctctcggcccatctggtgagaagggtaaactcggagttcccggactccccggatac
ccaggaagacaaggaccaaagggatctcaaggtttccaaggattcccaggagccaacgga
gagaaaggagctcggggattggcagggaagtccggcccacgcggacagaggggaccaacg
gggcctcgaggagagagaggagcaaggggaccaacaggaaagaatggaccaaagggtacc
tcaggaaatgacggcccaccaggacctctcggcgagaggggtctgccagggcctcaggga
ccaaccggcttcccaggaccaaagggccctcctggacccgcagggaaagacggactgccc
ggacatcctggacagagaggagagactggattccaaggcaagactggcccccctggcccc
ccaggtgtggttggccctcagggaccaacaggtgagactggaccaatgggagatcgcggt
catcctggacccccaggcccacctggtgagcagggtctacctggatctgcaggaaaggaa
ggagccaagggtgactccggtcccgctggcccactcggtaaggacggcccccctggactc
agaggtttccccggagagagaggtctgcccggcccggtgggggctcacggcctgaaagga
agcgaaggaccccatggcccacctggacccgctggttctcctggtgagcgcggccctgct
ggcccagccggacctacaggtctgcctggacgttccggaccccagggacccccggggcct
tccggagagaaaggaggacccggagagaaaggacctcaaggcccagctggaagagacggt
attcagggacctgtgggtctgcccggccctggaggacctcctggaccccccggagaggac
ggagacaagggagagctcggagagtccggccagaaaggaggcaagggggacaaaggagag
catggcccacccggtcccaccggccctcaaggacctgttggagcacccggtccagctggt
tcggatggagagcccggtcccagaggtcagcagggtctgtttggccagaagggagatgaa
ggatccagaggattccccggacctccaggtccagttggtctgcagggcttgcccggtccc
cccggagagaaaggtgaaactggagacgttggtcagatgggtccacccggtccacctggt
cccagaggcccctcaggacccccaggagcggacggccctcagggaccttccggtggcatt
ggaaaccctggctctgttggagaaaagggagctgctggagaaacaggagtgcccggactt
cagggagaactcggaggaccaggtccaagaggagagagaggagagaagggagagggtggt
ccagctggtacatcaggaccccccggccctaagggtccccctggagatgacggtcccaaa
ggaagccccggtccaagtggtttccctggtgactctggtccccctggagagcccggtgca
gctggattagacggacccgctggggacaagggagacgacggagaggccggtcaagccggt
tctcctggacccaccggagagtctggtccctctggacccccaggaaagagaggcccccat
ggaatatcaggaccagagggaagacaaggagagaagggaactaagggagagactggtatg
gaaggtccccaaggaaagacaggccccgttggttctcaaggatcacctggcaagcccggt
tctgaaggcctgcgcggtatccctgggccagttggagagcaaggtcttcctggttctcga
ggcccagatggacctccgggacccatgggtcctcctggtttacctggtatgaaaggagat
tctggcgttaaaggagagaagggccatcctgggcttattggtctcatcggacccccagga
gaacagggagagaagggtgaccgtggtctgcccggccccccaggacaacatggctccaag
ggagacaatggtatcgccggtccttcaggtcccctcggtcccctcggcccccctggacta
cctggtccatctggtcctaaaggagctaaagggtcatctggtcaaactggaccgaaggga
gagaccggtacatctggacctcctggccaacctggcccccccggcgatgtcatccacccc
ctccccatgatgtccaacatgaagggcagaacccgcaggaacatcgatgccagcgaggtg
atggacgacatgcctgcagataccaactacaaggactacgaagacggcatggaggaaatc
tttggctcgctcaactccctgaagctggagatcgagcagatgaagcacccgatgggaacg
cagagcaacccggcgcgtacctgtaaagacctgcagctctgccaccccgacttccccgat
ggtgagtactggatcgatccaaaccagggctgctctcgggactccttcaaggtgtactgc
aacttcacagcaggaggagagagctgcatcttcccagataagaagtctgaaggggctagg
ctcacgtcctgggtcaaggagactcccggctcctggttcagtgaattcaaacgtggtaaa
ctgctctcctacgtggatgccgagggtagccccgtcagcgtggtccagatgaccttcatg
cggctgctgagcgcggctgccagacagaacatgacgtacaactgctaccagtcggtggcc
tggcacgaccaggagcaggacggctacgacaaggccatccgcttcctgggctccaacgac
gaggagatgtcttacgataacaacccctacatccgcgcagtggtcgacggctgtgcgttg
aaaaagggttatgaaaagacggtacttgagatcaacacgccaaaggtggaacaggtgcca
tttgtggacattatgttcaacgactttggcggctccgcgcagaagtttggatttgaagtg
ggccccgtctgtttcatcggctaa
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integrated database retrieval system
