Pseudochaenichthys georgianus (South Georgia icefish): 117456469
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Entry
117456469 CDS
T09629
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
117456469
NCBI-ProteinID:
XP_033952263
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Position
2:4425982..4440513
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AA seq
742 aa
AA seq
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MAAVPLHTFCVTITVFQLCLLHLANGGAYHGPKQPPPRPQPPPLPQYNDGSPQQQFLGNE
MPHLPYGNEGPLLPQYGKDLPPLPLQKGIERPLNAGKGQTFFRGAKGPPPPRPVEGLREG
PQGIQGPPGPPGPQGPQGLPGQALSGLPGKPGPPGPQGYQGLGKPGMPGLPGKPGGPGLP
GSKGDLGSNGGGGSTGLPGPPGRPGPPGLPGILKPGGQGLPGQLGRLGEPGHKGPSGFPG
PSGPKGDRGYGQPGLPGLKGPSGPPGQPGNTGGPGFGKPGMNGVPGQPGIPGKTGTSGES
GLAGPTGERGQPGPPGLTGIGKPGNDGFRGQPGPPGGKGESGPHGLPGGPGMPGYGKPGF
PGPKGHIGHGGLTGPPGLKGDKGHGGLPGVIGPNGPSGMPGPPGPIGVPGSLGFPGQKGE
DGFAGQKGNPGLKGDIGPQGLPGKPGFSGGEGQPGPRGFQGPIGPKGEAGMRGSLGTPGA
SGLTGPRGEAGQTGGKGYQGQQGIPGLTGPGGPLGPPGMSGSKGETGLPGKSGYPGEGKL
GPSGNIGPQGNTGPSGPTGLTGQPGQPGLPGPPGLPAGSPDIGQVLPVTGPYPGTKQGWK
KNGGDIGGNGVEMPAFTAKLTTPFPSVGSPVIFDKLLHNGNQNYNPQNGVFTCSVPGVYY
FAYHVHCKGGNVWVALTKNNEPVMYTYDEYSKGLLDQASGSAVLPLRQGDTVHIQLPSDQ
ASGLYAGQYVHSSFSGFLLYPM
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgtacctctccacactttctgtgtaacaatcacggtgttccagctgtgctta
ttacacctggccaacggaggggcttatcacggacctaagcagccccccccgcggccccag
cccccgcccttgccacagtataacgacgggtctcctcagcagcagtttttggggaacgag
atgccacacctgccttatggcaatgaagggccattactgcctcagtatggaaaagatctt
cctccactgccgttgcaaaagggcatagagaggccgctgaatgcaggcaaaggccaaaca
ttcttcagaggggcgaaaggccctcctccacctcgtcctgttgaaggtctcagagaggga
ccacaagggattcagggccccccaggaccgccaggaccacaaggaccacaagggctacca
ggccaggcattgtccgggctaccagggaagcctgggccgcctggtcctcaaggataccaa
ggactcggtaaacctggcatgccaggattgccaggaaaacctggagggcctggattacca
ggatctaaaggtgaccttggttctaatggtggtggaggatcaactggacttcctgggcca
cctgggcgcccaggtccccctggacttccagggattttgaaaccaggaggtcagggactg
ccaggccagcttggtcgtctaggggagcctggccataaaggtccatctgggtttcctggc
ccttcaggtcccaagggtgacagagggtacggtcaacctggtttgccaggtttgaaagga
cctagcggaccaccaggtcaacctggcaatacgggcggccccgggtttggaaaacctggc
atgaatggtgtccctggacaaccaggaataccaggaaaaactggtacttctggagagtca
ggactggcggggcctactggtgaaagaggccaaccgggaccaccaggcttgacaggaatt
ggaaaaccaggaaatgatggtttcagagggcaaccagggccccctggagggaaaggggaa
tcgggccctcacggtttaccaggaggtccaggcatgccaggttatggtaaaccagggttt
ccaggacccaagggtcacattggacatggtggtcttactggacctccgggcctaaaagga
gacaaaggtcacggaggtcttccaggggtcatcggtcctaatggtcctagcggaatgccc
gggccaccgggaccaataggggttcctggtagtctcggattcccggggcaaaagggagag
gatggatttgcgggacaaaaaggaaatccaggattgaagggtgacataggcccccaaggt
cttccaggaaagccgggtttctcaggcggggaaggacaaccggggccgagagggtttcaa
ggacccatcggccctaaaggagaagcgggtatgaggggttcacttggtacccctggtgcc
tcggggttaactggaccgaggggagaggcgggacaaactggagggaaaggctaccaggga
caacaaggtatcccagggcttacaggaccagggggaccactcggacctcctgggatgtca
gggtcaaaaggtgaaacgggcctacccggtaaatctggctatcctggtgaaggaaaacta
ggaccctctggtaatattggtcctcaaggtaacactgggccaagtggccctactggactt
acaggacaacctggacaacccggactccccggtcctccgggactgcccgctggatcccct
gacatcggacaggtcctccccgtgaccggcccataccctggcacaaaacaaggttggaag
aaaaatggaggcgacatagggggaaatggcgtcgagatgcctgcgttcacagcaaagctc
actactccgttcccgtctgtaggatctcccgtcatctttgacaaactcctgcacaatgga
aatcagaactacaacccccaaaatggtgtttttacctgcagcgtaccaggggtctactat
tttgcttaccacgtccactgcaaagggggtaacgtgtgggtagcactgacgaagaacaat
gagccagtgatgtacacatacgacgaatactcaaagggcttgctggatcaggcatcgggg
agcgcagtactcccgttacgacaaggagacaccgtgcatatacagctgccgtccgaccag
gcctcaggactttacgccggtcaatatgtccactcttcgttttccggattcttattgtac
cccatgtaa
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