Pseudochaenichthys georgianus (South Georgia icefish): 117456527
Help
Entry
117456527 CDS
T09629
Symbol
cacna1bb
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04010
MAPK signaling pathway
pgeo04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117456527 (cacna1bb)
04020 Calcium signaling pathway
117456527 (cacna1bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117456527 (cacna1bb)
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117456527 (cacna1bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
EGF_Hmr-1
Motif
Other DBs
NCBI-GeneID:
117456527
NCBI-ProteinID:
XP_071061051
LinkDB
All DBs
Position
12:4262779..4473679
Genome browser
AA seq
2288 aa
AA seq
DB search
MILATIIANCIVLALEQHLPEHDKTPMSERLDDTEPYFIGIFCFEAAIKIIALGFAFHKG
SYLRNGWNVMDFVVVLTGILATVGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKA
MVPLLQIGLLLFFAILMFAIIGVEFYMGKFHSTCFIDDEVVADWPCGLVPPARLCPNGTI
CREYWKGPNFGITNFDNIGFAVLTVFQCITMEGWSEILYSTNDVLGNTWNWLYFIPLIII
GSFFMLNLVLGVLSGEFAKERERVEKRQEFLKLRRQQQIERELTGYLEWICKAEEVLLEE
EDEIAEEKSPLDGAWYKRKQNLPVHKRGKAKKGKNDLIGGEEGDDPFADICSVPPPGSPF
GRASVKSSGQMDSSTYFRRKEKRMRFFIRRMVKAPRFYWIVLCLVGLNTLCVAIVHYDQP
EWLTSALYAAEFVFLGLFLTEMSLKMYGLGVRNYFHSSFNCFDFGVIVGSICEVIWDMIK
PGASFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLG
MQLFGGMFNFEEETPTTNFDTFAAAILTVFQILTGEDWNAVMYHGIESQGGVHGGMFSSV
YFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEQQEQAANKKLALQKAMEVKEVSPM
SAANISISAFVKQNRDAISRRSSINSIQSAKEQLRSAKSMSVWEQRTNQLRKHNMRTSSE
ALFNELDPEERLQLASALHLHPDMMTHLDRPLVVEAKNGEKPCRSPDGGREETGEFKHDG
MGENQTHSRRHHRHRERNGEGRDGGEGHGGRHHTHHSRSRDHNGDRERRGDSSHSHDEGG
QGHRHNHQAGSPEEDNKDFRGGEERGHRHHHSHRSPKEGNGVIANGAQGEHRGKGGGGGE
SNGERRGRCSRMVRAHSTLDGDDCKRNKNGFKGHRDRQPDAEDDGLASSPLQPMRSNLSL
GEKQEDADNQKNSTRASQAGLNSNTIVIPVTITAPPGETTIIPMNNIDCDSFLFSDEKKD
LEDEEAANGPRQILPYSSMFVFGQTNPVRRLCHYVVNLRYFEMCILLVITMSSIALAAED
PVQANAPRNNVLKYLDYVFTGVFTFEMVIKMIDLGLILHPGAYFRDLWNILDFIVVSGAL
VAFACSGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYML
FMFIFAVIAVQLFKGKFFYCTDESKGLEKDCRGQFLDFNRDGVEAQPREWKKYEFHYDNV
LWAFLTLFTVSTGEGWPMVLKHSVDATYEDKGPSPGFRMETSIFYVVYFVVFPFFFVNIF
VALIIITFQEQGDKAMSECSLEKNERACIDFAINAKPLTRYMPANKQSFQYKMWKFVVSP
PFEYAIMSLIALNTVVLMMKCNSTSVPYNSMLKYLNILFTALFTLECFLKIIAFGPLNYL
KAAWNVFDFVTVLGSITDILVTEFKGMDKMINPCFLRLFRAARLIKLLRQGYTIRILLWT
FVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNEENAINLHNNFQTFFQALTLLFRS
ATGEAWHEIMLACLSNRPCDRLTGTVGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMD
NFEYLTRDASILGPHHLDEFIRVWAEYDPAACGRICYQDMYKLLRFISPPLGLGKKCPNR
VAYKRLVRMNMPIAEDKTVHFTSTLMALIRTALEIKLASGVLAQHLCDADLKREIARVWP
NLSQKTVDLLVTPPKYNELTVGKVYAALMIFDYYKQTCAKRLQQQNNTGLPQSKLGTLFR
PVLTLTQIKEVEPTFPFPKKPSPPQPEPETKLVALPSTSIPSISRDTALNQTRVIKHSQS
GDVSQMAQQRPKVRRKLQRGQSEDVPYATRPQEFVELTKVEDVSDSEAYPSLEGHCRAAS
LPRLNAEYYRSHPRHAPGTHLAPIVDLSPIKRSASSLTPQHYQEVGLREYDMERPGFAQS
PTGPGQIQDQDRAHHHHHHHRCHRRREKDKDKKQKSLDRAGSVQPSSTVDSFTDPSAEGL
SRERARERDRSRPHERRHHSSAGEKQRYYSCERYGSREQCHTKSAGPSRSTSPGEGQDAA
LLRQHGSSVVKAVPLPSGSSTPVRGRRQLPQTPLTPRPAVAYKTANSSPLQPSASAATTG
PQTRFSRGLSEHDRLNWGHDESPIPVTRIGSDSNLNRQSQISPQQASHGEDFHDSVSSHG
GGRFARNAASTSTTASASQGTAAASVTAANTQGRSGVPNGFHFTLGVNSASAAGSRGSLR
EREDEDWC
NT seq
6867 nt
NT seq
+upstream
nt +downstream
nt
atgatcctcgctacaattatcgccaactgcatcgtcctggccctggagcagcatctacct
gaacacgacaagacgcccatgtcagaacgcctggacgacacagagccctactttattgga
atattctgtttcgaggccgccattaagatcatcgccctgggcttcgcgtttcacaaaggc
tcctacctccgcaacggctggaatgtaatggacttcgtggtcgtcctcacaggaatccta
gccacggtgggtacagacttcgacctgcgaaccctgcgagcagtgagagtgctgaggccc
ctgaaactggtgtcaggaatccccagtctccaggtggtgttgaagtccataatgaaagcc
atggttcctctgcttcagatcggcctgctgcttttcttcgccatcctcatgttcgccatc
atcggggtggagttttacatggggaaattccacagcacctgcttcatagatgatgaggta
gtagcagactggccttgtggcttggtgcccccggccaggttgtgtccgaatgggaccatc
tgcagagaatactggaagggacccaactttggcatcaccaactttgacaatatcgggttt
gcggtgctgacagttttccagtgcatcaccatggagggctggtcggaaatcctctacagc
accaatgacgtgttggggaacacctggaactggctgtacttcatccccctcatcatcatc
ggctccttcttcatgctcaacctggtgctcggtgtcctgtctggagagtttgccaaagag
agggagcgtgtggagaagaggcaggagttcctgaagctccgccggcagcagcagatcgag
cgagagctcaccgggtatttggagtggatctgcaaagcagaggaggtgttgctggaggag
gaggatgagatagcagaggagaagtccccactggacggtgcgtggtacaagaggaagcaa
aaccttccagtccataaacgtggcaaagcgaagaaaggtaaaaacgacctgataggaggc
gaggagggggacgatcctttcgctgacatctgctccgtccctcctcctggctctccgttt
ggtcgggccagcgtgaagagcagcggtcagatggacagctccacctacttccggcgcaaa
gagaagaggatgcgcttcttcatccggcgcatggtgaaggctccgagattctactggatc
gtgctgtgtctggtgggcctgaacactctgtgcgtggccatcgtccactacgaccagccc
gagtggctcaccagtgccctctacgcagcagagtttgtgttcctgggtttgttcctgact
gagatgtccttgaagatgtacggcctcggagtgaggaattattttcattcctcctttaat
tgctttgattttggggtgatcgtgggaagtatttgcgaggtgatctgggacatgattaaa
cccggagcatcgttcggtatcagcgtgttgagagcgctgcgactgctcaggatattcaaa
gtcaccaaatactggaactcgctcaggaacctcgtggtctccctcctcaactccatgaag
tccatcatcagcttgctcttcctcctcttcctcttcatcgtggtctttgctctcctcggc
atgcagctcttcggaggaatgtttaactttgaagaagagaccccaaccaccaactttgat
acgtttgcagcagccatcctcactgtgttccagattctgacgggcgaggactggaacgct
gtgatgtaccacggcatcgaatcacaagggggcgtacatgggggcatgttctcctccgtc
tacttcatcgtcctcacgctctttggaaactacaccctactaaatgtgttcttggctatc
gctgtcgataacctcgccaatgcccaggagctgactaaggatgaggagcagcaggagcag
gcagccaataagaagctggccttgcagaaagctatggaggtgaaggaagtcagccccatg
tcagccgccaacatctcaatctctgcttttgtaaagcaaaatcgagatgcaatctctcgc
aggtcgtccatcaacagcattcagtcagctaaggagcagctgcgctctgcaaagtccatg
tcagtgtgggagcagaggaccaatcagctgaggaagcacaacatgaggacgagcagcgag
gctctgttcaacgagctggaccctgaggagcgcctgcagctggcctccgccctccacctg
caccccgacatgatgactcacctggaccggccgctcgtggtggaggccaagaacggcgag
aaaccctgcaggtctccagatggaggacgcgaagagacgggggaattcaagcacgacggg
atgggagaaaaccaaactcactccaggaggcaccaccggcaccgcgagaggaacggggag
ggccgggatggaggggaaggccacggagggaggcaccacacccaccacagccggagcaga
gaccacaacggggacagagagaggaggggggacagcagccacagccacgacgaaggagga
cagggacaccggcacaaccaccaggccggctcccctgaggaggacaacaaagacttcaga
ggaggagaagagagaggacaccgccaccatcactcccaccgttcacccaaagaggggaac
ggggtgatagccaacggagcacagggagagcacagggggaaggggggaggaggaggggag
agcaacggagagaggaggggacgctgctctcggatggtcagagcgcactctactctcgat
ggagacgactgtaagaggaacaagaatggattcaaaggtcacagggacaggcagccggat
gctgaggacgacggcctggcctccagtcctctgcagcccatgcgcagtaacctgagtctt
ggagagaagcaggaggacgccgacaaccagaagaactccaccagggccagccaggccggc
ctcaacagcaacaccatcgtcatccccgtcaccatcaccgccccgcccggagagaccacc
atcatacccatgaacaatatcgactgcgacagcttcttattcagcgatgagaagaaagac
ctggaggatgaggaggcggctaatgggcctcggcagatccttccctacagctccatgttc
gtctttgggcaaaccaacccggtgcggcggctgtgtcactacgtggtcaacctacgctac
tttgaaatgtgcatcctgttggtcatcacaatgagcagcattgctctagcagccgaagat
ccagtgcaagcgaatgcgccgcgcaacaacgttctcaagtatctggattatgtctttacg
ggggtcttcacttttgagatggtgataaagatgattgacttgggactgatcctccaccct
ggcgcttatttccgtgacctgtggaacattctggacttcatcgtggtcagcggagctctg
gtggcctttgcctgctcagggacgaaaggcaaggacataaacaccatcaagtccctgagg
gtcctccgagtcctgcggccactcaagaccattaaacgtctccccaagctgaaggcggtg
ttcgactgcgtcgtgaactctctgaagaacgttcttaacatcctcatcgtctacatgctc
ttcatgttcatcttcgctgtcatcgccgtgcagctcttcaaggggaaattcttctactgc
accgacgagtccaagggtctggagaaagactgcaggggtcagtttctggacttcaaccgt
gatggtgtggaagctcagcccagagagtggaagaagtacgagtttcactacgataacgtt
ctctgggccttcctgacgctcttcaccgtgtctacgggagagggctggccaatggtcctg
aagcactctgtggacgccacctacgaggacaagggccccagccccggcttccgcatggag
acatccatcttctatgtggtctacttcgtggtgttccccttcttcttcgtcaacatattt
gtggctttgatcatcatcactttccaggagcagggagacaaggccatgtcggagtgcagc
ctggagaagaacgagagggcttgtatcgactttgccatcaacgccaagccgctaaccaga
tacatgccggcgaacaagcagtccttccagtacaagatgtggaagtttgtggtgtcgccc
ccgttcgagtacgccatcatgtctttgatcgccttgaacacagtcgtgctgatgatgaag
tgcaactccacttcagtcccgtacaactccatgctgaaatacttaaacatcctcttcaca
gccctcttcacactggagtgcttcctcaagattattgccttcgggccgctgaactacctg
aaagcagcgtggaacgtgtttgactttgtgaccgtgctggggagcatcacggacatcttg
gtgacagagtttaaaggaatggataagatgatcaacccgtgtttcctgaggctcttcaga
gcggcgcgcctcatcaagttgctgcggcagggatacaccatccgcatcctgctgtggacc
ttcgttcagtccttcaaggctctgccgtatgtctgcctgctcattgccatgctgttcttc
atctacgccatcattggaatgcaggtgtttggaaacattgaactgaatgaagagaacgca
ataaatctccacaacaacttccagacctttttccaggcgttgactcttctcttcaggagt
gcgacgggcgaggcgtggcatgagatcatgttggcgtgtctcagtaaccggccgtgtgat
aggctcacaggaaccgtggggaaagagtgtggaagtgactttgcctacttctactttgtc
tccttcatcttcctctgctccttcctgatgctgaacctgtttgtcgctgtcatcatggac
aactttgagtatctgaccagggacgcctccatccttgggcctcatcacctcgatgaattc
atccgcgtgtgggcggagtacgaccctgctgcctgcgggaggatatgctatcaggatatg
tacaaattgttgcgttttatctcccctcccctgggcctggggaagaagtgccctaacaga
gtggcttataagcgattggtgaggatgaacatgcccattgcggaggacaagacggtgcac
ttcacctccacgctgatggccttgatccgcacggcgctggagatcaaactggcatctggg
gtcctggcgcagcatctatgcgacgctgacctgaagcgggagatcgcccgcgtgtggccc
aacctgtcgcagaagaccgtcgacctgctggtgaccccacccaaatacaacgagctgacg
gtgggaaaggtctacgcagctctgatgatctttgactactacaagcagacctgtgccaag
agactccagcagcagaacaacacaggcttacctcagagtaaactcgggacgctgttccgt
cccgtgctgaccctcactcagataaaggaagtagaaccaacgttccccttccccaaaaag
cccagccccccccagcctgagccagaaaccaagctagtggcactgcccagtaccagcatc
ccctccatcagcagggacacggcgctaaaccagacgagggtcataaaacattcccagtcc
ggagacgtttctcagatggcacaacagagacccaaagtccggaggaaactacagagaggc
cagtcagaggatgttccctacgccaccagacctcaggaattcgtcgagctgacgaaggtg
gaggacgtttcagactcagaggcatatccgagcctggagggccactgcagagcggcttct
ctgcccagactcaacgctgagtactaccggagccaccctcgccacgcccctgggacccac
ctggcaccgattgtggacctgagtcccatcaagcgctcggcctcctcgctgacgccgcag
cactaccaggaggtcgggctaagggagtatgacatggaacggcccggcttcgctcagtcc
ccgacgggcccaggtcagatccaggaccaggacagagcccaccaccatcaccaccaccac
cgctgccatagacgcagggagaaagataaagacaagaagcaaaagtctctggatagagct
ggatcagtgcagccatccagcacagttgattcgttcaccgacccttcagcggagggtttg
tccagagagcgagcgagggagcgtgaccgcagccggcctcatgagaggaggcatcactcc
tcagcaggagagaagcagcgctactactcctgtgagcgttacggcagcagagagcagtgt
cacaccaaatcagccggtcccagcagatccacgtcccccggagaggggcaggacgctgct
ctgctcagacagcatggtagcagtgtggtgaaagctgtgccgctgccctcgggttcgagc
actccggtccgcggtcgcaggcagctccctcagacccccctcacccctcgtcctgccgtg
gcttacaagaccgccaactcctcgcctctccagcccagtgccagcgccgccaccacgggg
ccccagactcgcttcagccgcggcctttcagagcacgatcggttaaactggggccacgac
gagtccccgatccccgtcacccgcatcggttcggactctaatctaaaccggcagtcgcag
atctcccctcaacaggcgtcccatggagaggacttccatgactctgtgagtagccacgga
gggggacgctttgcccgaaacgcagcctccacctccaccacagcctcggcttcacaagga
actgccgctgcgtccgtcacagcggcaaacacgcagggtcgctcgggggtgcccaacggg
ttccacttcaccctcggggtcaactctgcgtctgccgctgggagccgagggagtctcagg
gagagggaggacgaggactggtgctaa
DBGET
integrated database retrieval system
