Pseudochaenichthys georgianus (South Georgia icefish): 117456548
Help
Entry
117456548 CDS
T09629
Name
(RefSeq) chondroitin sulfate proteoglycan 4-like
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pgeo00535
]
117456548
04091 Lectins [BR:
pgeo04091
]
117456548
Proteoglycans [BR:
pgeo00535
]
Cell surface proteoglycans
Others
117456548
Lectins [BR:
pgeo04091
]
C-Type lectins
Others
117456548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
TMEM154
Motif
Other DBs
NCBI-GeneID:
117456548
NCBI-ProteinID:
XP_033952366
LinkDB
All DBs
Position
12:complement(9864078..9882990)
Genome browser
AA seq
2516 aa
AA seq
DB search
MRSFVAGLLLLISAGHVYGVSFYGDGYVHLRTVETSIQTFLHVRFRTTDLAGLLFLAAGR
KDFLLLELISGRLQVRLDLGSGERSLCLEKDMYLSDMAWHSVELTHNGHFVNLTVDQNSH
ASMQMPGPDIELSVEDGLFVGGAAELNHPYLLNNTTGFKGCIDKVVFNEHNLFSTLKPYS
GYKSIHKVSQGCTAQFSAIEDSLSFFSSKAFISLPPWEGPHELLFECELSPSATEEYGVV
LYSSAKKGGFVAIEIRDGNMVATVGNGDGSKLELRSLTHVNRNRTWYPVQLHLLPSSVQL
KVGEELVKVNLSLELQVIQLRGPLFLGGLDKEAREEARQAGLMSAVPGGQLAGQASSFRG
CLREIRVNTQIMGLLNATVTKDVSLGCETGPDPEALTTTHQTDRPQFDVTTPQSITNNKK
NQNFLSLRKLEVVEGGRAPLEPKHIKVNLDFQKWGIHPSQMMFLIERQPAHGQLQLDLRA
EEVDRTFNMLDLWQGRVMYVHGGSEDQHDFFIFSVFSSNKKALPVFLKGNRLYRFDISIS
PVNDAPVLSLPAGNLFTVLERSKRQLTLDVLRVSDPDSSPEDLVFSSLGNLKNEIGHLEH
QDNPGRAVNLFSLNDLKEGRISFVHTGVPTSRLAFRVSDGLNLSNTVVLRIMAVPLEHKL
VNNTGLEVNQGGASIITTNHLAVQLNVDNQGIEIRYDIIELPQYGELQRLHSSGDWKPTT
SFSQKLLKKERIQYLNTYHGLQTQSNVTDYFRFKISIRSLATTEDIVLIKVRWIQFKVTR
SKMEINGVQTSVVTPEDLYGISKGVKLNESDLYFKLLTVPKKGQLFLDNKALQRNSTFSQ
KNITDGLVKYELFNTLQDDTRDTLSFQLFSTHANSIAYDFRININAESNAITVLNKGLST
LEGGSKVISKDMLFTHTASNREVQYSITVSPRHGQIRRINLSNASSINDNIVTFINQDII
EERIMYVHDDSETKQDSFTFNIMVYKPHKWTNKKEDRIRAEHTFNISVNLVNDQRPFRVV
DKVFHVARDGQRLVMLNDLRFRDDDSDFEDSWLVYTRRGIPMGDLVLASDTSHKLYEFTQ
QDIEQKKVLFVHKGVSFGRFVLFVSDGKHYVSTLLEVMAQDPYIHVENNTGLIVQRGGIM
ILTSANLSIFSNMDIRDPQEVVFEVFLPPKHGSLCFTDGDCETVTEADALTAFTQQDLVV
GRLAYRHGGSHELSDGFNVTVKARENDPERRLHRKTREIRLDIGVKVKIYLEGHQRSPTV
ISNRPVVVAEGQNVSISKEHLEVVHEDSQPSEIVFTVQYPPTWGFLQRYPSDDHQEHSGE
QQHLYQNIREQPTNVFSQTDLNQGLILYHQQAAGHTNDSILLEATNGVTKVGPISLEIDI
IPILLPLQVSYLTLDEGSSLSLTSDIIKVANHHFSGMNFLYQLIVPPRHGHLEHSRIPGM
PITAFTHTEVEHEYIFYIHDGSNTLRDNFTITANQTEIRKHSLPCTAHIYVTPVDDETPV
VTTNKGLKVWEGSVTEITTDDLSAEDSDTPEPEQLEFVVTPPSSGHLALKSAPSRHILNF
TQNHIQTGQLMFVHSGALSGGFHFQVNDGVNVAPRQIFSTAAHSLVLTLKRNHPLQVSPG
SVTQVSELELQAVTNDIRDTRRSHSVVFAVTALPKLGSLVRRMPDNSTQNISTFTQSMVN
EGVILYDQNKPQPVGWSAGDSFSFTVSSPPALLPPHTFTISISQQPNKHPESLYNTRLLN
NAGAVVAEGGRVKIDRSKLDASNLLWKVPEPQRKENHILYRLTSLPRHGALSIKGHNLTR
NHPYFSQVTLNKFGITYVHDNSETTSDSFTLRAWVAPLHHSSSSSDSSSSDSSSFTPLYS
ALSSLSVKERAAVTETFNITVTSVNDQPPAIMSTAPSVKVVVGERVTIGPEDLQVEDNDT
PPEKLHYHVIREPNNGYLTLGKGPEPVTTFTQNDVNHGRLHFKQQGEPSTGIFYFNVTGH
HLPLYKLLSLEVIKPSVYMVNNTGLSLVQGRTAVVLTTNQLAAHTHRQANITYTVTKHPR
HGRVAINDQEVMSFNHEDLQFGRVVYHMTDLSESEDSFQVSVSASSHRVEFGNVTVHTVK
VTVLPLVYLREPVRVPSGVPVKLGRGMIDASELARISRTNPVFWVLSPPKHGKLVKITYD
PNRASEVLNSFTFRDVMQGRVAIEETLSDGDSELHNNKSAGGHAPATSLSDSFTFLVRAG
NVQPAKGELHFTILPHHHMHHGPGSSNTDATGHTTTHLPTHNKTTIGRAGERGGDRGIST
TLSGAGVGSPPHILMHKTHNRTQHKLRPHSRWGNHTRSGSHKGRSGSHADGAGGDHSHTP
KPHTPPVSKHGPPAPPDTRPAHVEFLPRPAADPLLIILPLLACLLLIVILVVLILVFRRR
REKDAQLRVRQQLAAVTLPPEGSPYLGWAEQSMAMPAVVVTPLGPASCPNSPRVKLSDKR
RSLAPGMTFWGPFEADGEGEDENIGPDNINERDNVMLKTLRSRSSIPTLKDNQYWV
NT seq
7551 nt
NT seq
+upstream
nt +downstream
nt
atgaggagttttgtggccggtctgctcctgctgatttctgcaggacacgtttatggagtg
tcgttctacggtgatggctatgtacacctgcggacagtggagacatccattcagacgttt
cttcatgtacgatttcgaaccaccgatctggccggcctgctgtttttggcagctggacgc
aaagacttcctactgctggagctgatctctggccgcctgcaggtacgtctggacctgggc
tctggtgagcgttcactttgcttagaaaaggacatgtatctcagcgacatggcgtggcac
tctgtagagctgacccacaacgggcattttgtcaacttgacagttgaccaaaactctcat
gccagcatgcaaatgccaggcccagatatcgagctcagtgttgaggatgggctttttgtt
ggcggggcagccgaactgaaccacccataccttctcaacaacaccactgggtttaaaggt
tgcatagacaaagttgtgtttaatgaacataacctattttccaccctaaagccttattct
gggtataagagcatccataaggtatcacagggctgtactgcacagttttctgcaatagaa
gattctctcagctttttcagctccaaagcttttatatctctgccaccctgggaggggcca
catgagctgttgtttgagtgtgaattgtccccatctgccacagaagaatatggcgttgtc
ctatatagctctgccaagaagggagggtttgttgcaattgagattagagatggtaacatg
gtggcaacggtcggaaatggagatgggagtaagcttgagttgcgttctctcacacatgtt
aaccgcaaccgcacctggtaccctgtacagctgcatctgttgcccagcagcgtccagctg
aaggtgggagaggagttggtcaaggtcaacctcagtctggagctccaggtcatccagctc
agagggcctctctttctgggagggctggacaaagaagcccgggaagaagcaaggcaagct
gggctgatgtccgcagtgcctgggggtcaactagctgggcaagcaagctcctttagaggc
tgcctcagagaaattagggtgaacactcaaataatgggcctgcttaatgctacagtgacc
aaagacgtttctctgggctgtgagacagggccagatccagaagcattgaccaccacccac
caaacagatcgtccccaatttgatgttacaaccccacaatcaataaccaacaacaagaag
aaccagaactttctgtcgctgagaaagctagaagttgtggagggaggccgggcaccactg
gaacccaaacatataaaggttaatctggattttcaaaaatggggcattcatccatcccag
atgatgtttcttattgagaggcagcctgcccacggccaactgcaactggacctcagagca
gaggaggttgatcggacatttaatatgctggacctgtggcagggccgagtgatgtacgtt
cacggtgggtcagaggaccagcatgacttcttcattttttcagtcttctccagcaataag
aaggcacttcctgtgtttctaaagggaaaccgcctgtatcggtttgacatcagcatcagt
cctgttaatgatgcgcccgtgctcagcctaccggcggggaacctttttactgtgctggaa
aggtccaaacgacagctaacactagatgtgctgagggtgtcagaccctgacagcagtcct
gaagacctggtgttcagctccctgggaaatctcaaaaatgagattggacaccttgagcat
caggataaccccggcagggcagttaacttgttctccttgaatgatctaaaggagggtagg
atcagctttgtccacactggggttcccacatcccgtctggcattcagggtcagcgacggg
ctgaacttgagcaacacagtcgttttgaggattatggcagtgccacttgaacacaaactg
gtgaataacaccggactggaggtgaaccaaggcggtgcttctatcatcacaaccaatcac
cttgcagtacaacttaatgtggataatcagggaatagaaattcgctatgacatcattgag
ttgccacaatatggtgagctccaaaggctgcactcaagtggcgactggaaaccgacaact
tccttctctcagaagcttctaaagaaagaacggattcaatacctcaacacttaccatggt
cttcagacacagagcaacgttactgattacttcagatttaaaatcagcatcaggtcctta
gctaccacagaggatattgtactaatcaaggtacggtggatccaatttaaggtcacacgc
agtaagatggagatcaacggtgttcagacttctgttgtaactcctgaggacctctatggg
atttctaagggtgttaaactcaatgagagtgacctctactttaaactcctcacagtacca
aagaaagggcagctattcctcgacaacaaagctctacaaagaaactcaaccttcagccaa
aagaatatcacagatggcttggtgaagtatgagctcttcaacacgctgcaggatgacaca
cgagacacgttaagttttcagctgttttcaacacatgccaactcaatagcttacgacttc
agaatcaacatcaatgcagagtcaaatgccatcactgttttaaacaaaggcctttcaacc
ctggaaggaggcagtaaagtcatcagcaaagatatgctgttcactcacacggcaagtaac
cgtgaggttcagtacagcatcactgtgagcccaaggcacggccagataagaaggatcaac
ctttcaaacgcaagttccataaacgacaacattgtgacattcataaatcaggatatcatt
gaggagaggatcatgtacgttcacgacgacagcgagactaagcaggattctttcactttt
aacattatggtttacaaaccgcacaaatggaccaataagaaggaggacagaatcagagca
gaacacaccttcaatatctctgtgaatcttgtcaacgatcagagacctttcagggttgtc
gataaagttttccatgtagcccgcgatgggcagaggttggtgatgttgaatgacctccgt
ttccgggacgatgactccgactttgaggacagttggttggtgtacacgaggagggggatt
ccaatgggagacctggtgctagcaagtgataccagtcacaagctctacgagttcacacaa
caggacatcgagcagaaaaaagtgttgtttgtccacaaaggagtgagttttgggcgtttt
gtgctcttcgtatcggatgggaaacattatgtttcaacactgctggaggtgatggcgcag
gatccatacattcatgtcgagaacaacacaggactcattgtccagcgaggcgggatcatg
atcttaacctccgctaatctcagcatctttagcaacatggacatccgagacccacaggaa
gttgtatttgaggtcttccttccccctaaacacggaagtctctgctttacggatggagat
tgtgagaccgtaacagaagcagatgcacttacagcattcacccagcaagatttggtggta
gggcgactagcgtatcgccatggtggcagccatgagttgtcagacgggttcaacgtgaca
gtaaaagcaagggaaaatgacccagagaggcgactgcacagaaagacgagggagatacgt
cttgacatcggagtgaaggtaaaaatctacctggagggacaccagaggtcaccaactgtc
ataagtaaccgtccagtggtggtggcagagggacagaatgtttctattagcaaggagcac
ctagaggtggttcatgaggacagccagccctcagagatagtatttactgttcaatatcct
cccacctggggctttcttcagcgttatccctccgacgaccaccaggaacacagtggagaa
cagcagcacctatatcaaaacatcagagaacagccaacaaatgtattcagccagacggac
cttaaccagggattgatcctctaccatcagcaggctgcaggacacaccaacgactccatt
ctgctagaggcaaccaacggggtcacaaaggtcggacctatcagcctggagatcgacatc
atccctatcctgctccctctacaggtgtcttacttaacccttgatgaggggtcgtccctg
tccctgacctctgacatcatcaaggtggccaatcatcacttctcagggatgaacttcctg
tatcagctcatcgttccaccgcgacacggacacttggagcacagccggatcccgggcatg
cccatcactgctttcactcacactgaggtggaacatgagtacatcttctatatccatgac
ggcagcaacacactgagggacaacttcaccattacagccaatcagacggaaatcaggaag
cacagtctaccctgcaccgctcacatctacgtcacacctgtcgatgacgagactcctgtg
gttacaactaacaagggtctgaaggtttgggagggttcagtgacagaaataacaacagat
gatctcagtgcagaggattcggacacacccgagccggagcagctggagttcgtcgtcaca
ccgcccagcagcggccacctggccctgaagagcgccccgtccagacacatcctgaacttc
acccagaatcacattcaaactggacaactgatgtttgtgcacagtggtgctttatcaggt
ggctttcacttccaggtaaacgacggtgtgaatgttgcacctcgccagatcttcagcaca
gctgcccactccctggtcctcactctgaagagaaatcatcccctgcaggtttccccaggc
tctgtgacacaagtatctgagctagagcttcaggccgtgaccaacgatatcagagacacc
agaagaagccactcggtggtatttgcagtcactgctcttcccaaacttggcagcctggtt
agacgtatgcctgacaactctacgcaaaacatttccacgttcacacaaagcatggtgaat
gaaggcgttatcttgtacgatcagaacaagccacagccagttggatggtcggccggggac
tctttctctttcaccgtgtcctctcctcctgctctccttcctccacacaccttcaccatc
tcaatctcccaacagcccaacaagcatcctgagagcctttacaacacccgactgctgaac
aacgcaggtgctgtggtggccgagggaggcagagtgaagattgataggtctaaactagat
gcctccaatctcctctggaaagtcccagagcctcaacggaaagaaaaccacatcctgtac
cgcctgacttccctgccgcgccatggagctctgtctataaagggtcataacctcaccagg
aaccatccttatttctcccaggtcaccctgaacaagttcggcatcacatacgtccacgac
aactcagagacgacgagcgacagcttcactctgcgggcctgggtggctcctttgcatcac
tcttcctcctcctcagattcctcctcctcagattcctcctcctttacccccctctattca
gccctatcatccttatctgtaaaggagagagcagcagtgacggagacgtttaacatcacc
gtgacatctgtcaacgaccagccaccagctatcatgagcacagcaccgagtgtgaaggtc
gtagtcggagagagagtcacgattggcccagaagatctgcaggttgaggataatgacacc
cctccagagaagctgcactaccatgtgatcagagagcccaacaacggctacctgacgcta
gggaaaggaccggagccggtgaccaccttcacacagaacgacgtcaaccacgggcggctg
cacttcaaacagcagggagaaccctcaacaggtattttctacttcaacgtaaccggtcat
catctcccactctacaaactgcttagtttggaagtgataaaaccctctgtttacatggtg
aacaacactggcctgtcattggttcaaggtaggaccgccgtggtcctgacaaccaaccag
cttgcagctcacactcacaggcaggccaacattacctacacagtcaccaaacaccctcgc
catggacgcgtcgctatcaacgaccaggaagtcatgagcttcaaccacgaggacctacag
tttggccgtgttgtctatcacatgactgatctcagtgaatcagaggacagcttccaagtc
tctgtgtcagcgtcgtcccacagggtagaatttggaaatgtgacagtgcacacggtgaag
gtaactgtgctgcctctggtctacctgagggagcccgtgagagtgcccagtggtgtccct
gtgaaactggggaggggcatgatcgatgcatcggagctggcgagaatcagccgaaccaac
ccggtattttgggttctgtctccaccaaaacatggcaaactagtcaagataacctatgac
cctaaccgagcttcagaggtactgaattcgttcacattcagagatgtgatgcaaggccgg
gtcgccatcgaggagactctcagtgatggtgacagcgagctgcataataacaagtcagct
ggaggccacgcccccgccacatctctcagtgactctttcaccttcctggtgagagctgga
aacgtccaaccagcaaagggcgagctccacttcaccatcttaccccaccaccatatgcat
catggtccaggcagttcaaacacagacgctacaggtcacacaactacacatcttcccaca
cataataagactactataggaagagcaggtgagcgaggaggtgatcgagggatttccacg
acgctcagcggggccggggtgggttcacctcctcacattttgatgcataagacccacaac
aggacacagcataagttgaggcctcacagccgctgggggaaccacacccgcagtgggagt
cacaaaggaagatcagggagtcatgcagatggagcaggaggggatcatagtcacacccca
aaaccccacactcctcctgtgtccaaacacggcccaccggcccctcctgacacccgccca
gcccacgtggagttcctccctcgccccgccgccgaccctctcctcatcatcctgccgctg
ctcgcctgtttgctcctcatcgtaatcctcgtagttttgattctggtgttccgccgccgc
agggagaaagacgcccagctgcgggtccggcagcagctcgccgcggtgacgttacccccc
gagggcagcccttacctgggctgggcggagcagagcatggccatgcccgctgtggtggtc
acccccctcgggcctgctagctgccccaactcacccagggtcaaattaagtgacaaaagg
aggagtctggcccctgggatgaccttctgggggcctttcgaagcagatggagaaggtgaa
gatgagaatattggacctgataacattaatgaaagagataatgtaatgttgaagactctg
agatctagatcctctattccgactcttaaagacaaccagtactgggtttga
DBGET
integrated database retrieval system
