Pseudochaenichthys georgianus (South Georgia icefish): 117456891
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Entry
117456891 CDS
T09629
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117456891 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
117456891 (lrfn1)
Cell adhesion molecules [BR:
pgeo04515
]
Immunoglobulin superfamily
SALM family
117456891 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
117456891 (lrfn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
Ig_2
ig
fn3
LRR_5
LRR_9
LRR_14
Ig_DSCAM-DSCAML_C
C2-set_3
Sp38
DUF4834
PRIMA1
Motif
Other DBs
NCBI-GeneID:
117456891
NCBI-ProteinID:
XP_033952642
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All DBs
Position
13:20390214..20541194
Genome browser
AA seq
758 aa
AA seq
DB search
MDRLVLCVLLCAALSKGYSCPGRCICQHLSPTLTLLCAKTGLLFVPPSIDRRTVELRLTD
NFITIIRRKDFFNMTSLVHLTLSRNTISQIIPLAFLGLRSLRALHMDGNRLSAIKTDHLK
GLINLRHLILGNNQIHQVATTAFDEFVVTIEDLDLSNNNLRTLPWEAIARMTNINTLTLD
HNLIDHIGTGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSDTTGSSSSTLAVSFGG
NPLHCNCELLWLRRLTREDDLETCASPDHLMDKYFWSIQEEEFICEPPLITKHLTTKPYV
MEGQGVTLKCKAVGDPDPEIHWRSPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNCV
ASNAAGIATAAVEINMIPLPLFVNNTGHMREDPGLSDITTSSKSGNDTKGYDKQDRRVMV
SELTSSSAVIRWPSERHIPGIRMYQIQYNSTADDTLVYRMIPSTNKNFLINDLAAGREYD
LCVLAVYDDGVTSLTATRVVGCVLFHTANEVSQCRFMHSQFLGGTMIIIIGGIIVASVLV
FIIILMIRYKAYSGPEDGNSKVSSSMHSQTNGSQQRLQRSASKQPSDEGQHDAHAPKQCM
ALVMRADNEKKENPAATTAILEVELPPMTADKMKRRTSLDAQCSGPPSEDTQTDSSLTGS
TMSLCLIGPNAGTKEAPRLKDKKGALANMGLLPNELARTRHRFSFDGGDYSIFQSHSYPR
RARTRWHKSTNQLNTESSPLANRRVTFSSTEWMLESTV
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggaccggctggttctctgcgtgctgctgtgcgcagctctgtcgaagggatacagctgc
ccgggccgctgcatttgccagcacctctcacccactctgaccctgctctgtgctaagacc
ggtctgttgttcgtgcccccctccatcgaccgcaggaccgtggagctaagactcacagac
aacttcatcaccatcatccgcaggaaagactttttcaacatgaccagtttggtgcacctc
acgttgtcccgtaacaccatcagccagatcatccctctagcctttctcggcctgcggtcc
ctgcgggcgctccacatggacgggaaccgcctcagtgcgataaagacagaccacttaaaa
ggcctcatcaacctgcggcacctcatcttgggcaacaaccagatccatcaggtggccacc
accgcctttgatgagtttgtcgtcaccatagaggacttggatctttccaataacaacctg
cgcacccttccctgggaagccatagccagaatgaccaacattaacacactcacgctggac
cacaacctgattgaccacattggaacggggacttttacactgctcaccaagctggtgcgc
ctggacatgacgtctaacaggctgcagaagctgccgccggacagcctgttccagcacgct
caggtgctgtcggacactacgggctcaagctcctccaccctggctgtgagctttggagga
aaccctcttcactgtaactgtgagctgctgtggctccgcaggctgacacgagaggacgat
ctggagacctgtgcctcgccggaccacctcatggacaagtatttctggtccatccaagag
gaggagtttatctgcgagcctccgctgatcacaaaacatcttaccacaaagccctacgtg
atggaagggcagggtgtgactctcaaatgcaaagcagtgggtgatccagacccagaaatt
cactggcggtctccagatggcaagctggtgcataacaactcccgcaccatcctgtatgat
aatggcacccttgatattctcatcaccacgctgaaggacagtggggcctttaattgtgtg
gcctccaatgccgcaggcatcgccacagctgctgttgagatcaacatgatccccttaccc
ttgtttgttaacaacacaggccacatgcgtgaggaccccggcctctcagacatcaccacc
tcctccaaatctggcaatgacaccaagggttacgacaagcaggacaggagggtgatggtg
agcgagctgacctcgtcctccgctgtgattcgctggccatctgagcgccacatccccggc
atcaggatgtaccagattcagtacaacagcaccgcagatgatactttggtgtacagaatg
atcccatctaccaacaagaacttcttaatcaatgatctggccgcggggcgggagtatgac
ctttgtgtgctggcggtttacgacgacggcgtcacatcgttaacggccacacgtgtggtt
ggctgtgtgcttttccacacggccaacgaggtcagccagtgccgcttcatgcacagccaa
ttcctgggaggcactatgatcattattattggcggtataattgttgcttcagtgctggtg
ttcattatcatcctgatgatacgttataaggcctacagcggcccggaggacggcaattcc
aaggtcagctccagcatgcactcgcagaccaacggcagccagcagcggctccagcgctcc
gcctccaagcaaccgtccgatgagggccagcatgatgcgcacgcacccaaacagtgcatg
gcgctggtgatgagggcggacaatgagaagaaggagaatccagcagccaccactgccatc
ctggaggtggagctgcctccgatgactgccgacaagatgaagagaagaaccagcctggac
gcgcagtgctctggcccaccatccgaggacacgcagacggacagtagcctgacgggctcc
accatgtccctgtgtctcataggccccaacgctggcaccaaggaggctcccaggctcaag
gacaagaaaggtgcccttgccaacatgggattactccctaatgagctggcacgaactagg
cacagattctcttttgacggaggggattactccatttttcagagtcatagttacccacgc
agagcgaggacaaggtggcacaagtccaccaaccagctcaacacggagtcctcgccgctc
gccaacaggagagttacgttcagcagcactgagtggatgcttgagagcacagtctga
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