Pseudochaenichthys georgianus (South Georgia icefish): 117456895
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Entry
117456895 CDS
T09629
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117456895 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117456895 (prpf8)
Spliceosome [BR:
pgeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117456895 (prpf8)
Complex C
U5 SnRNP specific factors
117456895 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
117456895
NCBI-ProteinID:
XP_033952648
LinkDB
All DBs
Position
13:28190191..28210165
Genome browser
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPGGMPPGVPPPITVPDYMSEEKLQEKARKWQHLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDNEEDSPVAEWLYDHQPLKDANKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHYVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPLLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
PTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPMEFYHEVHRPSHFLNFASLQEGEVYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaccttcccctacagaggggtccctggagggatgccaccgggtgttccccct
cccataactgtcccggactacatgtctgaggaaaagctgcaggagaaagcaagaaaatgg
cagcacttgcaggcaaagcgctactcagaaaagagaaagtttggctttgtggatgcccag
aaggaagacatgccacctgagcatgtccgcaagatcatcagggaccatggagacatgacc
aacagaaagtttcgccatgacaagagggtgtacctcggtgccctcaagtacatgccccat
gcagtgctgaagctgctggaaaacatgcctatgccctgggaacagatcagagacgtgcct
gtcctctaccacattaccggagctatttcctttgtgaatgaaatcccttgggtcatagag
ccggtctacatcgcacagtggggcactatgtggatcatgatgcgacgtgagaagcgtgat
cgtcgtcacttcaagcggatgcgatttcctccatttgatgatgaggagccgccgctggat
tatgcagacaacatccttgatgtcgaaccactggaggcgatccagatggagctggacaat
gaggaggactctcctgttgcagagtggctctatgatcaccaacccctcaaagacgcaaac
aagtttgtcaatggcaccacctaccgtcgctggcagttcacactgcctatgatgtccaca
ctgtaccgcctggccaatcagctgctcacagacctggtggatttcaactacttctacctg
tttgacctcaaggccttcttcacttccaaggccttgaatatggccatccctggaggaccg
aagtttgagccacttgtcagagacatcaaccttcaggatgaagactggaatgagttcaat
gacatcaacaagatcatcatccgacagcctatcaggacagagtacaaaatcgctttcccc
tacttgtacaacaacttgccgcactatgtccacctaacctggtatcatacgcccaacgtg
gtgttcatcaagacggaggatccagatctcccagcgttctacttcgacccgctgatcaac
ccaatttcccacagacactctgtcaagagtcaggaacctctgcctgatgatgacgaggag
tttgagcttcctgagtatgtggagcccctcctcaaggagaccccactctacacagacaac
acagccaatggcatcgctctgctgtgggcaccgagacccttcaacctcagatctggccgc
acaaggcgtgccattgatatccccctgatcaagaactggtatcgtgagcactgccctgca
ggacagccagtgaaagtgcgtgtgtcctaccagaaacttctcaagtactatgtgctcaat
gctctcaaacacagaccacccaaagcccagaagaagaggtatctgttccgctccttcaag
gccaccaagttcttccagtccaccaagctggactgggtggaggtcggtctgcaggtctgt
cgtcagggttacaacatgctcaatctgcttatccatcgtaagaacctcaactacctgcat
ctggactacaacttcaacctgaagcctgtcaagacactgaccacaaaggaaagaaagaag
tcccgattcggaaatgccttccacctgtgcagagaggtgctgcgcctcagcaagctggtg
gtggacagccacgtgcagtacaggctgggaaatgttgatgccttccagttgtccgatggt
ctgcagtacatctttgcccacgttggccagctgactggcatgtaccgttacaagtacaag
ttgatgagacaaatccggatgtgcaaagatctgaagcatctcatttactaccggttcaac
actggtcctgttggcaagggcccaggttgtggcttctgggctcccggctggagggtgtgg
ctgttcttcatgagagggatcactccgctgttggagaggtggctgggaaatctgcttgcc
aggcagttcgaaggacgtcactcaaagggcgtagccaagactgtgaccaaacagcgcgtg
gagtctcactttgacctggagttgcgtgccgccgtgatgcatgacatcctggacatgatg
cctgagggcatcaaacagaacaaagccagaaccatcctgcagcacctcagtgaatcctgg
aggtgctggaaggccaacatcccctggaaggtgcccggcctgcccactcccattgagaac
atgatcctgcgctatgtgaaggctaaagctgactggtggaccaacacggctcactacaac
cgtgagcgaatccgccgtggagccactgtggataagacggtgtgcaagaagaacctgggg
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggcccctatatcacagctgaagaggcggtggccatttacaccaccactgttcattggctg
gagagtcggcggttctcccccatccctttccctcccctgtcctacaaacatgacaccaag
ctgctcatcctggccctggagaggctcaaggaagcatacagtgtgaagtctcgtctgaac
cagagtcagagggaggagctgggtctgattgagcaggcttacgacaatcctcacgaggcc
ttgtccaggatcaaacgtcacttgctcacccagagagccttcaaagaggttggtattgag
ttcatggacttgtacagtcacctggtgcctgtgtatgatgtcgagcccctggagaagatc
acagatgcctacctcgaccagtacctatggtacgaggcggacaagaggcgtctgttccca
ccctggatcaaacctgctgacactgaacccccaccactgctggtctacaagtggtgccaa
ggcatcaacaacttgcaggacgtgtgggagacggcggagggagagtgcaacgtgatgctg
gagtcccgctacgagaagatgtacgagaagatcgatctgaccctgctcaacaggctgctg
cgtctcattgttgaccacaacatcgctgattacatgacagccaagaacaacgtggtcatc
aactacaaggacatgaaccacacaaactcctatggcatcatcagagggctgcagtttgcc
tcattcattgtgcagtactacggcctggtgatggacctgctggtcctgggtctgcaccgt
gccagtgagatggctggcccgcctcagatgcccaatgacttcctcagtttccaagacaca
cccacggagagcgcccacccaatccgattgtactgccgttacatcgaccgcatccacatc
ttcttcaggttctctgccgatgaggccagggatctgattcagaggtacctgacggagcat
ccagaccccaacaatgagaacattgtgggttataacaacaagaagtgctggccccgcgat
gcccgcatgagactgatgaagcatgacgtcaacctgggacgtgctgttttctgggacatc
aagaaccgcctacccagatccgtcaccacggtgcagtgggagaacagctttgtttccgtc
tacagcaaagacaaccccaacctgctcttcaacatgtgcggatttgagtgccgtatcttg
ccaaagtgccgcaccagctacgaggagttcactcacaaggacggtgtgtggaacctgcag
aacgaggtaaccaaagagaggaccgcacagtgtttcctgcgtgtggatgatgaatcaatg
cagcgtttccacaacagagtgcggcagatcctgatggcctctggatccaccacattcacc
aagattgtgaacaaatggaacacggctctgattggtttgatgacgtacttccgcgaggct
gtggtcaacacccaggagctcctggacctgctggtgaagtgcgagaacaagatccagact
cgtatcaagatcggcctgaactccaaaatgcctagccgcttccctcctgtcgtcttctac
acccccaaagagttgggtgggcttggcatgctgtccatgggccacgtgcttattcctcag
tcagacctgcggtggtccaagcagacagacgtgggtattacccatttcaggtctggaatg
agccacgaagaggaccagctgattcctaacttgtatcggtacattcagccatgggagagc
gagttcatcgactctcagcgggtttgggccgagtacgccctcaagaggcaggaggccatc
gcccagaacaggcgtctgaccctggaggatctggaggactcatgggacagaggcatccct
cgtatcaacacacttttccagaaggacagacacacactggcctatgacaaaggctggaga
gtcaggacagatttcaaacagtaccaggtactgaagcagaatccgttctggtggacccac
cagaggcacgatggaaaactgtggaacctgaacaactaccgcacagacatgatccaggct
ctgggcggagtggagggcatcctggaacacacactctttaagggcacttactttcccacc
tgggagggtctcttctgggaaaaggccagtggttttgaggagtccatgaaatggaagaag
ctgaccaatgcccagaggtctggtttgaaccaaatccccaaccgtcgcttcacactttgg
tggtcccccaccatcaacagagccaacgtgtacgtaggtttccaggtacaacttgatctg
acgggtatcttcatgcacggcaagatccccactctgaagatctccctcattcagatcttc
agggctcacttgtggcagaagattcatgagagcgtcgtcatggatctctgtcaggtgttt
gatcaggagctggatgctcttgagattgagacggtgcagaaggagaccatccatcccagg
aagtcatacaagatgaactcctcctgtgcagacatcctgctctttgcatcatacaagtgg
aacgtctctcggccatctctgcttgctgactcaaaggacgtgatggacagcaccaccaca
cagaagtactggatcgacatccagctgcgctggggtgactatgactctcatgacatcgag
cgctacgccagggccaagttcctggactacaccacggacaacatgagtatctacccctcc
cccactggagtgctcatcgctatcgacctggcttacaacctacacagtgcctatggtaac
tggttccctggaagcaagcctctgatccagcaggccatggccaagatcatgaaggccaac
ccggccctgtatgtgctcagagagcgcatccgcaagggtctgcagctctactcctccgag
cccactgagccctacctgtcctctcagaactacggagaactcttctccaaccagatcatc
tggtttgtggacgacaccaacgtgtaccgagtcaccatccacaagacctttgagggtaac
ttgaccacaaagcccatcaacggagctattttcatcttcaaccccaggactggtcagctc
ttcctcaagatcattcacacctcagtgtgggctggacagaagcgtctgggacagctggcc
aaatggaagacagctgaagaagtggctgctctgattcgttccctccccgtggaagagcag
cccaaacagatcattgtaaccaggaagggcatgctggaccctctggaggtccacttgctc
gacttccccaacatcgtgatcaaaggttctgagttgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagatctgatcctgaaggcgaccgagcctcagatggtgctgttc
aacctctacgacgactggctcaagaccatctcgtcctacacagccttctcccgactcatc
ctgatcctcagagcgctgcacgtcaacaatgaccgcgccaaggtgatcctgaagcctgac
aagaccaccatcaccgagcctcatcacatctggcccacgctcaccgacgaagaatggatc
aaggtggaggtgcaactcaaagatctcattctggcagattacggcaaaaagaacaacgtg
aacgtggcctcactgacacagtctgagatccgtgacatcatcctgggtatggagatctct
gctccctcacagcagcgccagcagattgccgagattgagaagcaaaccaaagagcagtcg
cagctcacagccacgcagacccgcactgtcaacaagcacggtgacgagatcatcacatcc
accacctccaactatgagacccagaccttctcatcgaagaccgaatggagagtcagagcc
atatctgctgccaacctccacctccgaaccaaccacatctacgtgtcatctgacgacatc
aaggagacgggctacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagatttgcgtgcacagattgcaggctacctgtatggcacgagtccaccagacaacccc
caggtgaaggagatccgttgtatcgtcatggtgccacagtgggggactcaccagactgtt
cacctgcccaaccagctgccgggtcatgaataccttaaagaaatggagccactcggatgg
atccatacccagcccaatgagtcgccccagctgtccccacaggacgtcaccacacatgcc
aaggtcatggctgacaacccctcatgggacggagagaaaaccatcatcatcacctgcagc
ttcacaccaggctcgtgcacgctcacagcctacaagctgacacccagtggttatgagtgg
ggtcggcagaacacagacaagggaaacaaccctaaaggctacctgccctcccactatgag
agagtgcagatgctgctctctgaccgcttcctgggcttcttcatggtgcctggccaggtc
tcctggaactacaacttcatgggtgttcgccatgaccccaacatgaagtacgacctgcag
ctggccaaccccatggagttctaccatgaagtccaccggccctcgcacttcctaaacttt
gcctcgctgcaggagggtgaggtctataacgcagaccgtgaggacatgtacgcctga
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integrated database retrieval system
