Pseudochaenichthys georgianus (South Georgia icefish): 117457124
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Entry
117457124 CDS
T09629
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117457124 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117457124 (dhx36)
03012 Translation factors [BR:
pgeo03012
]
117457124 (dhx36)
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117457124 (dhx36)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117457124 (dhx36)
Translation factors [BR:
pgeo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117457124 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
NPHP3_N
NB-ARC
T2SSE
Motif
Other DBs
NCBI-GeneID:
117457124
NCBI-ProteinID:
XP_033952894
LinkDB
All DBs
Position
13:22949213..22982834
Genome browser
AA seq
1067 aa
AA seq
DB search
MSHAYGGGGGRRGGRGGRGGGRGYRDGSRERWDRGGGRGSGGQSSDFDQDPGGGGQRDRP
PPHLKGRDIGMWYARYGAVRRKQADRRSRPVVQMDAAREQHITKLLNSVQNDQPGPARDC
RDAGASTSDSWRSAANSSGHCYFDGEASEEDTKKIEFKSEEEKEEVTHKSQRYFSPAVVK
DETPDAWDKDDQQEKEEKESLKNKDKELEFLCQEVVRDSSLDERLQRDLQSKKSDPKYKE
MLKFREKLPSYKKKEELVQLINSSRVLVVSGETGCGKTTQVTQFILDDYINRGVGSMCRV
VCTQPRRISAISVAERVSAERAESVGNGNSCGYQIRLQSRLPRKQGSVLYCTTGIILQWL
RSDPMLSSISHLVLDEIHERNLQSDVLLVIVKELLNLRDDLKVILMSATLNAEKFSKFFD
NCPVIHIPGLTFPVEEFLLEDIVEMTSYRPKHSDRRPSWKKGFMQGRQSRPEKEEKEAEY
KESWPCYARTLQDRYSDHTIEALEMFDNDDKIDLELILALIRHIVLKEEEGAILVFLPGW
SDISSLNDLLTAQQMFRSDRFVIIPLHSLMPTVNQTMVFKRPPPGVRKIVIATNIAETSI
TIDDVVYVIDGGKIKETHFDTNNNISTMTSEWVSLANAKQRKGRAGRVCPGKCYHLYNGL
RASLLDAYQLPEIMRTPLEELCLQIKILKLGSIAQFLEKALDPPTEKAVNLAIKNLIDLN
ALDHSENLTALGFHLARLPVEPHIGKLLLFGALLGCLDPVFTIAASLSFKDPFFIPLGKE
KMADMRRRVLSRNSKSDHLTIVNAFQGWEEAKQRGSRCEREYCWDNFLSANTLQMLHNMK
GQFADHLMNTGFVSSRDPKDPKSNVNSDNEKLIKAVIVAGLYPKVAMIKPSHSKKRPGVK
VYTQADGKVCIHPKSVNAEETEFNYKWLVYHLKMRTSSIFLYDCTEVSPFSLLFFGGDIT
IQKDEDQETIAVDQWIVFSSPARIAHLVKSLKKELDSLLEEKIRNPAPVDWQNRQSTDCA
VITAIIDLITTQDKPTVSTKGRLWRPAPRGQHTHFKDGNDDDDDDDD
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgcatatggtggcggaggtgggagaagaggtggaagaggaggtcgaggagga
ggtcgagggtacagagatggaagcagagagagatgggacaggggaggcggacggggctca
gggggacaaagctcggacttcgaccaggacccaggaggagggggacaacgggaccggcct
cccccacacctgaagggacgggatatcggtatgtggtacgcaagatacggagccgtgagg
aggaagcaggctgaccggagatcgcggccggtggtccagatggatgcagccagagagcag
cacattacgaagctgcttaactctgtccaaaatgatcagcctggtccagcgagagactgc
agggatgcaggagcctctacatcggacagctggcggtcagctgccaatagtagtggtcat
tgttactttgatggcgaagcgtctgaagaggatacaaagaagattgagttcaagtctgaa
gaggagaaggaagaagttactcataaatcacaacgttacttctctccagcagttgttaaa
gatgagactccagatgcgtgggataaagacgaccagcaggagaaagaggagaaagaaagt
ctgaaaaataaagacaaggaactggagttcttgtgtcaagaagtagtgagggacagttca
ctggatgaacgcttacagagagatctgcagagcaagaaatctgatccaaagtacaaagaa
atgctgaaattcagggaaaaactaccgtcctataaaaaaaaagaggagcttgtgcaactg
atcaactctagccgggtcctggtggtgagcggggagacgggctgtggaaagaccacccag
gtcacccagttcatcctggatgactacatcaacagaggagtgggctcgatgtgtcgggtg
gtctgcacgcagcctcggcgaatcagtgccatctcggtagcagagcgtgtatcagcggag
agggcagaaagtgtaggaaatggaaattcatgtggttaccaaatccgcctgcaaagccgg
ttaccacggaaacagggttcggtcttgtactgtacaacaggcatcattcttcagtggctt
cgctcagacccaatgttgtctagtatcagccacctggttttggacgaaatccacgagagg
aacctgcaatctgacgttttgctcgtcatcgtcaaggaactacttaaccttcgagatgac
ctcaaggtcatcctcatgagtgccacgctcaatgcagagaagttttcaaagttttttgac
aactgtccagttatccacatccctggtttgacgttcccagtggaagagttcttgctagag
gacatcgtggagatgacgagttatcgccctaagcattcagaccgccggccctcatggaag
aaaggctttatgcagggccgccagtccagacctgagaaggaggagaaggaggctgagtac
aaggagagctggccttgttatgcgcgcactctgcaggacagatactccgaccacaccatt
gaggccctagagatgtttgacaatgatgacaagattgaccttgagctgatcttggcactg
attcgccacattgtgctcaaagaggaggaaggagcaatcttggtcttcctgcctggctgg
agcgacatcagcagtctcaatgacctgctcacggctcagcagatgttccgatcagatcgg
ttcgttatcatccctctgcattccctcatgcctaccgttaatcagacgatggtgttcaaa
aggcctcctcctggagttagaaagattgtgatcgctaccaatatagccgagaccagcatt
accatagatgacgttgtttatgtgattgacggaggcaagattaaagagacacactttgac
accaacaacaacatcagcactatgacttcagagtgggtcagcctggccaacgctaaacag
aggaaaggacgtgccggcagggtgtgtccggggaagtgctatcacctgtacaatggtctc
agagccagcctgctggatgcctatcagttacctgaaatcatgaggacaccgctggaggag
ctctgcctgcagatcaagatattgaagctcgggtctatagcccaattcctagagaaagcc
ctggaccccccgactgaaaaggctgttaacctagccatcaagaacctcattgacctgaac
gccctggaccattcagagaatctgacagcgctgggtttccacctggctcgtctgcctgtg
gagcctcacatcggcaaactcctcctgttcggagccctgttgggctgcctggaccccgtg
ttcaccatcgctgcttcactcagcttcaaagaccctttcttcatccccctggggaaagag
aagatggcagatatgaggaggagggtcctgtccagaaactccaagagtgaccatctcact
attgtcaacgcctttcagggctgggaggaagcgaaacagcgtggttccaggtgtgagagg
gagtactgctgggacaacttcctgtccgccaacacactccagatgctgcacaacatgaag
ggtcagtttgctgaccatctcatgaacacaggcttcgtcagcagcagggaccccaaagat
cccaaatctaatgtcaactcagacaatgagaagttaatcaaggcagtgattgtagccggc
ctctacccgaaggtggccatgatcaaaccatctcacagcaaaaagaggccgggggtcaag
gtgtacacccaggctgatggaaaggtgtgcatccacccaaaatcagtcaatgctgaagag
acggagttcaactacaagtggctcgtctaccacctgaagatgagaacgagcagtatcttc
ctgtacgattgcactgaggtgtccccgttctcactgctgttctttggaggagacatcaca
atccagaaggacgaggaccaggagaccatcgccgtggaccagtggatcgtcttcagctcc
ccggcacgcatcgctcacctggtcaagagtttaaagaaagagttggattctcttctggaa
gagaaaattcgtaaccctgctcctgtagactggcaaaaccgtcagtccacagactgtgct
gtcatcaccgccatcatagacctcatcaccacccaggataagcctacagtcagcaccaaa
ggcagattatggaggcctgctccgagaggacaacacactcacttcaaagacggcaatgat
gatgacgatgatgatgatgattag
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