Pseudochaenichthys georgianus (South Georgia icefish): 117457229
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Entry
117457229 CDS
T09629
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein
KO
K08775
breast cancer 2 susceptibility protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03440
Homologous recombination
pgeo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117457229 (brca2)
03460 Fanconi anemia pathway
117457229 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pgeo04121
]
117457229 (brca2)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117457229 (brca2)
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117457229 (brca2)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
117457229 (brca2)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
117457229 (brca2)
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
117457229 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
117457229 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
BRCA2_TR2
Tower
RF-1
Motif
Other DBs
NCBI-GeneID:
117457229
NCBI-ProteinID:
XP_033953061
LinkDB
All DBs
Position
13:complement(17023413..17044619)
Genome browser
AA seq
2980 aa
AA seq
DB search
MDLTLPSKHIYDTYKDEIWKELGPLDPDWFESLAAQTFTNEGHFYDQDDLCANQEGNFKT
PLDKSAVESQLFSTPKAFRRIRVVSPETGDDHSFTGEQERETLPWTTTQSPCLFQMSKWD
PGARNGRYQTFDPLHTPHKSPVSYSKHISEGLSVQIHPDILWTSSLNTPPAEPSTLILTK
ADESPCPVGVSAEQDVVFVRKLFPSLSNPSKVEVVSPKNNGIPSVQGVVSPEAGLDPESH
HSPQSSLNLSDSGWKQKLPDAIEDGDIRKTEASVLNGAEHVLSIFFSNSSSALRKVKSER
IKRKQIIPTREHGCCSTDISSTNDKQRTADQEPGRLPSSPPVKTGDVGITQWSPLSLSEI
PPSTVEASCYDSTPATQVGNIILTEQLRSHSGQLVRPLLKLTDSGFTKKKRTFIYTVGTS
KPQVHGEEKRTQKIDSSPVIPDYGNKVNVTQSGKSQDEAYYCSMGKNEMQKWGNLAEDIL
PPSVQAKVQDLDMSQLCKEFAQDFSQSSDARKLNKVAEDTPGNGFSPSACLSAVKRAKQK
AIQAKLHHDCDGDSDGGFQSTDFTHITASSFVHPSSEINDQSKPMPGFTSDIGKISPFTS
TNKGNDKDVLQETEMDAKLSSATKESQTLVPGRAIKLHTESTSAQLPSGAKGTEDITYGI
PFNGPACSSLPEKTTVSLPSVHASGFKTSSNKGIQMSLANLQRAKHLFEETEGEKTQCDQ
PSKCILDNKKEMSRGSVKNPTTNSNNPPSSSETKEDISCQLTASQKADVTELCTLLEEAD
SQFEFTQFKTAKVKQHSQDKTTSPKKVEREFDPDSLSGIDFDDSFSSEEKHLAVTVMYEK
RDLVPDGKTNCDTPNITSKSTGLLLSSAIKNENSSTEVASTTKGPRLILSTDHKTLDRAL
LTDTSKLENNNPLLGVGFKTAGGNNLKVSKKCLSKARALFADLEENLVTSQTSPDKLRRD
HRTQHKTTVDNCKDSSLHDKLKESVCSEKLVTSIRDENAAQSFENIKMDTTCQRGFQMAC
GKGITITAKARSQQEADVFFEDTMDFNDGLSVKHQKSTVPLPGSVSHNETLLNCKGIKVT
VPEELINNPEHVNAGPAAPHTEVQQNVKILNVGFKNAPSFGDYAPFHENPSTAKALSSLS
CTTSTSTGSSAINKSSNGVGFFTASGKKVSMSADALKKAESLLNEMNPLGDANQQLKQQG
DALRTGHLTNNHIQVTAPKHCGFQTASGKGVAISSTALKKAKMLLSECDEVVDEINVTPA
RSTMPVPGPQLGKSGFPAGGSKPVALSYEAIQKAKALFSDVSFSTEIPAVSDTMNREKKQ
GNAENTKEMHCGFTTAGGAKVHVSHTNLLKAKHLLTEFDDDPISTRAKQEADTLFKDCDF
MNRNNGRPVKQKRSIEPVSGSSSKKKNLSHFKQDEKITINISEEPRIQNLPLVVNHEKMQ
HPHDVETHKDDFKKTLDSIEVASLHGNPSLMSKPLSPALCTTSKNIGSSAVNGLGKGGGF
CTASGKKVSVSDSSMSKAKSLFNESAIFEDTNKQKEGTFLPMNGGFQTASGKGVTISSSA
LKKATTLLSDCEGVEDALEHCKPPVPGPPPRSNGFLAASGKSVAFSSEALQKARALFSDI
SFSTEIPAVSDTRNSDKQQGHDEKPEKIHCGFTTAGGTKVNVSRKNLLKAQNLLAEEADG
KCHSSNSYSTCPQDTNKPDPSKVIDVKQTCKPSTDSGKDMRTGFCGPLVFKSSTSLQNPE
QENESLRNPSLPDCISFQDKAHTDTFQLKGTTSPALAGNLHDSPEEEMSIGLEYETNRTS
NSKGCTVKRPQESSVLNAQSLHLSGCTETQQKFFAQEALDCTKALLDDESLAGQSLSMTL
ENMPLQEIPKSSFRSAEERKGTGKRSVEDSDIAGQPPLKRRLLEEFDRTVDDPKGSTLCP
ETSCPKGVMKDRRVFKYSVSLHPNITKPPGGRNDIETRLQKMTPPQPSIPGDSRSSHPKM
PAFVPPFLRNAKTESHKNGVLKVNQGTPSAFVPPFKKQRPIVQESSSKPQEEEDNNLHLF
VTPFCSNTFVPTAKKTQSTTDVTGNKSKEDIQTVSLAGTTNISLNGQNVAMGCGSEDSSA
EASQVEDILSPSQDIFQNFPNVELARDVQDMRIRKKKRQTIRPLPGSLFLTKTSGGSRIP
LKAAVNGKPPAIYTQKQLYGHGVHQHVCEITSETAESFRFNLQQFIRREALIEGGGVQLA
DGGWLVPSKDGTAGKEEFYRALCDTPGVDPKLMSEAWAYNHYRWIVWKQASMERSFPESM
GSLCLTPEQLLLQLKYRYDVEVDHSRRPALRKIMEKDDTSAKTLVLCVCGVVSRGHSTNR
QSFSDTKTPPDAEAKVENPSAVVWLTDGWYAIKAQLDEPLTAMLHKGRVAVGGKLIIHGA
QLVGSQDACSPLEAPESLMLKICANSSRPARWDTKLGFHKDPRPFLLPISSLYSNGGPVG
CVDIIFLRSYPIQWMERKTDAGAVFRSVRAEEKEARQHDSNKQKAMEILFAKIQAEFEKE
DKGNSRPQRRRRTISRQSIAGLQDGEELYEAVGDDPAYLEAQLSEQQLETLRSYRCSLME
KKQADLQDRFRQALENAEESEGSCPKRDVTPVWRLCLADLMDQPGSVYQLNFWRPSSDLQ
SLLKEGSRYKVYNLTTSDGKKHVGNTTVQLTGTKKTQFQDLPVSQEWLSTHFQPRVSTHF
VDLQNTELQPQCGEVDLTGYVISIVDGQGFSPAFYLTDGEMNFVKVRCFSSFAQSGLEDL
VKPNVLLALSNLQLRGQSTSPTPVVYAGDLTIFSTNPKEVHLQKSLCQLRKLAQGQDSFF
TIAEEKLSHLGKSDGTSSFSSPALQTRNTAFTTVRRLDTYTSVTSQQPVRSLGSFTPVSR
KPPAANCSTEKDPNSLKKRRALDYLSRIPSPPPLSPFGPVASPCVNTTFNPPRRSGTPST
LKTVQTPAQTPVETPVEDEWVNDEELAMIDTQDLHVADLL
NT seq
8943 nt
NT seq
+upstream
nt +downstream
nt
atggatttaacgttaccctctaaacacatttacgacacatacaaagatgaaatctggaaa
gagctgggccctctggaccccgactggtttgagtccctggcagctcaaacgttcaccaac
gagggacatttttatgatcaagatgacctgtgtgccaatcaagaaggaaactttaaaaca
cctttggacaaaagtgcagtagagagtcagctgttttcaaccccaaaagctttcagacgc
attcgagttgtgtcacctgaaactggggatgaccattctttcaccggtgaacaagaaaga
gaaacattgccatggacgacaacacaaagtccttgtttgtttcagatgtcaaagtgggac
ccaggtgctagaaatggaagataccagacatttgatccacttcataccccacacaaatcc
ccagtcagctacagcaagcatatatctgaaggtctcagtgtacagattcatcctgatatt
ttatggaccagttctctgaataccccaccagcagaaccatccaccctcattttaacaaaa
gctgacgagagtccctgtccagtaggtgtttctgcagaacaagatgtggtttttgtacgg
aagcttttcccttctctttcaaatccatctaaagttgaagtggtgtcacccaaaaacaat
ggtataccttccgttcaaggtgttgtttcccctgaggctggtctggatccagagtcccac
cactcccctcagagttcactgaatctgagtgacagtggttggaaacagaagctaccagat
gctattgaggatggagatattcgcaaaacagaagcaagtgttcttaatggagctgaacat
gttctctctatatttttcagtaacagtagttcagcactgagaaaagtcaaatcggaaaga
atcaaaagaaagcaaatcattccaaccagagaacatggctgctgctctacagacatctcg
tcaacaaacgataaacagagaacagctgatcaggaacctggcagacttccttcatcacca
cctgtaaaaactggagatgttggaattacccagtggtctccgttgagtttatctgaaatt
ccaccttctactgtggaggcttcttgctatgatagtactcccgctacgcaagtgggaaac
attattttaacagaacaactgcggagtcactctggccagctagtcaggcctttgttgaaa
cttacagactctggatttactaagaaaaagaggacatttatttacactgttgggacttca
aaaccacaagttcacggagaagaaaaacggactcagaagattgactcatccccagtgatt
ccagattatggaaacaaagtaaatgtgacacagtcggggaaatcccaagatgaagcatac
tattgcagcatgggaaagaatgagatgcaaaaatggggaaatctcgctgaagatattcta
cctccctctgtacaagcaaaagtccaggatcttgacatgtcgcagctttgcaaagaattt
gcacaagacttcagtcaatcgtcagatgcccgtaaactgaataaagtagcagaggatact
cctggaaatggcttctctccatcagcttgtctgtcagctgtgaaacgagctaaacagaaa
gcaatacaagcaaaacttcaccatgactgtgatggtgacagtgacggtggattccagtct
acagatttcactcacattactgcatcatcatttgttcatcctagctcagagattaatgat
caaagtaaaccgatgcctggttttacatctgatatcggcaagatctctcctttcacatct
acaaataaaggaaatgacaaggatgttttacaagaaactgaaatggatgccaagctgtcc
agtgcaaccaaggaaagccagacactggttcctggcagagcaattaagttgcacacagag
agtacatcagcacaactacccagcggggcaaaaggaactgaggatatcacttatggcatt
ccctttaatggtccagcttgtagcagtctgccagagaaaaccacagtttctcttccttcc
gtgcatgcatcaggatttaaaacatcttcaaataaagggatacaaatgtccttagccaac
ctacagagagccaagcatctatttgaagaaactgagggggaaaaaacgcaatgtgaccag
cccagcaagtgcatccttgacaataagaaagaaatgagtcgtggatcagtgaaaaatcca
accaccaactcaaacaacccaccttcttcaagtgaaacaaaagaggatatcagttgccag
ttaacagcttcacaaaaagctgatgtgactgagctttgcactctcttggaagaagcagat
agccagtttgaatttacacagtttaaaactgcaaaggtgaaacaacacagtcaagataaa
actacctctcccaaaaaagttgagagagaatttgaccctgattcactttcaggtatagat
tttgatgacagttttagttcagaagaaaagcatctggcggtaacagtaatgtatgaaaaa
agggacttagttccagatggtaaaacaaattgtgatacacccaacattacaagtaaatcc
acaggtctgttattgtccagtgcaatcaaaaatgaaaactcctcgactgaagttgcgtct
accactaaaggcccaaggcttattctttcaactgatcacaaaacccttgacagagccctg
ctcacggacacaagcaagctggagaacaacaaccctttacttggtgtgggatttaagact
gcaggaggaaacaatttgaaagtttcaaaaaagtgtttgagcaaagctagggctttgttt
gcagatttagaggagaatcttgtgacaagtcaaacctcaccagacaagctgagacgggat
cataggacacagcacaagactactgtggacaattgcaaggattcatctttgcatgataag
ttgaaggagtctgtctgttcagaaaaactggtcacaagcataagagatgaaaatgctgca
caaagttttgaaaacatcaagatggacaccacgtgtcaacgtgggttccaaatggcctgt
gggaaagggattactatcacagcaaaagctaggagtcagcaggaggcagatgttttcttc
gaagacactatggactttaatgatggcctatcagtaaaacatcagaagagcactgtaccg
ttgcctggaagtgtcagtcataacgagacccttctaaattgtaaagggataaaagtaact
gttcctgaagaactgatcaataaccctgagcatgtgaatgctggaccagctgcaccccat
acagaggtacaacaaaatgtaaagattctaaatgttggttttaagaacgcaccgtctttt
ggagattatgcccctttccatgaaaacccttcgactgcaaaggcactttcatctctttca
tgcacaacatctacgagtactggctcctctgccatcaataaatccagcaacggtgttgga
ttttttacagccagtggaaagaaggtatctatgtcagctgatgcactgaaaaaagcagag
tcccttttgaatgaaatgaatcctcttggggacgcaaaccaacaactaaaacaacaagga
gatgctttaagaacaggtcatctcaccaacaatcatattcaggttacagcccctaaacat
tgtggatttcagacagccagtggtaaaggagtggccatttcatctacagctctcaagaaa
gcaaaaatgttgttgagtgaatgtgatgaagttgtagatgaaatcaatgtgacaccagca
cgttcaacgatgccagttcctggtccacaacttgggaagagtggatttcctgcaggcggc
agtaagccagtggcattgtcttatgaggctatccagaaggcaaaagctctcttcagtgac
gtcagtttcagtacagagatcccagctgtttcagacaccatgaatagagaaaagaaacaa
ggcaatgctgaaaatacaaaagaaatgcattgtggttttacaactgcagggggagctaaa
gtccatgtttcacatacaaatctattaaaagcaaaacacctcttgacagaatttgatgat
gatcctatttcaacaagagcaaagcaagaggcagatactttattcaaggactgtgacttt
atgaatagaaacaatggcaggccagtaaaacagaagagaagtatagaacctgtgagtgga
agcagcagcaagaagaaaaacctttcacattttaaacaagatgaaaaaattaccataaat
atttctgaagaacctagaattcaaaatctgccattagttgtgaaccatgaaaagatgcaa
catcctcatgatgttgagactcacaaagacgattttaagaaaacactggattctatcgaa
gttgcttctttacatggaaacccatctttgatgtcaaagccgctttctcctgcattgtgc
acaacttcaaagaacattggttcctctgcagtcaatggattgggcaaaggtggtggattc
tgtacagccagtggcaaaaaagtttccgtgtctgatagctcgatgtcaaaagcgaagtct
cttttcaacgaaagtgctatatttgaggacacaaacaaacagaaagaaggaacttttcta
ccaatgaacggtggatttcagacagccagtggcaaaggggttaccatttcatcttcagca
ctaaagaaggcaacaactctgttaagtgactgtgaaggagttgaggatgcactggaacat
tgcaagcctccagttcctgggccgccacccaggagtaatggatttcttgcagccagtggt
aagtcagtggcattttcttctgaggccctccagaaggcaagggctctcttcagtgacatc
agtttcagtacagagatcccagctgtttcagacacaaggaacagtgataagcaacaaggc
catgatgaaaaaccagagaaaatacattgtggttttacaactgcagggggaacaaaagtc
aatgtgtcacggaaaaatctattgaaagcccaaaaccttttagcagaagaagctgatggg
aagtgtcattcttcaaactcatactcgacatgccctcaggacactaataaaccagatcca
tcaaaggttattgatgtgaaacaaacatgtaagccttcaacagacagtggcaaggacatg
cgtactgggttttgtgggccgctggtattcaaatcctcaacctctttgcaaaatcctgag
caagaaaatgaatctcttcgaaatccaagtctacctgattgcatttcttttcaagacaag
gcacatacagatacatttcagttaaaaggcacaactagcccagcattggctggcaacctc
catgacagccctgaagaggaaatgtccattggtttggaatatgaaacaaatcggacaagt
aacagtaagggatgtacggtcaaaaggccacaagagtcttctgttttaaatgctcagtca
cttcacctaagtggctgcactgaaacccagcagaagtttttcgcccaggaagctctggac
tgcactaaagctttgttagatgatgaaagtctagctggccaaagtctctcaatgacttta
gaaaacatgccactgcaagaaatcccaaaatccagcttcagatctgccgaggagcgaaaa
ggaacagggaaaagatcagtggaggactcagatatagctggtcagcctcccctgaaaagg
cgattactggaagaattcgacaggactgttgatgatcccaaaggttcaacactctgtccg
gagacaagttgtccaaaaggtgtaatgaaagaccgaagggtttttaaatacagcgtctct
ctccatccaaacattacaaagccacctggtggaagaaacgatattgaaaccagattgcaa
aagatgacaccaccacagccatcaatcccaggagacagcagatcatcacatcccaagatg
ccagcgtttgttcctccattcctcaggaatgcaaagacagagagtcacaagaatggagtg
ctcaaggtcaaccaaggaacaccttctgcatttgttcctccattcaaaaaacaaagacct
attgtccaagagagctcctctaaaccacaagaggaggaagataataacctccatctcttt
gtaacgcccttctgcagcaacacttttgtgccaaccgctaaaaaaacacagagcactaca
gatgtaactggtaataaaagcaaagaagacattcagacggtgtccttggctggcactaca
aatataagtcttaatggtcaaaacgttgctatgggctgtggatcagaggactcttctgcc
gaggcgtcacaagtggaagatatattgtccccaagccaagacatatttcagaattttcct
aatgttgagctggcacgagatgtgcaagatatgaggatcaggaaaaagaagcgccagacc
attcgacctttgccgggaagtttgtttcttaccaaaacctcaggggggtcgaggataccg
ttaaaagctgcagtaaatggaaagcctcctgcaatatacacccaaaagcagctgtatgga
catggagttcatcagcacgtgtgtgagatcaccagtgagactgcagaatccttccgcttc
aatttacagcagttcatcagacgggaagcattaatagaaggaggtggtgtgcagcttgcg
gatggaggatggctagtccccagcaaggacgggactgcagggaaagaagagttttataga
gcgttatgtgacacacctggtgttgatcctaaactaatgagtgaggcgtgggcgtacaat
cactaccgatggattgtgtggaagcaagcctccatggaaagatcatttccagaatcaatg
ggcagtctctgtctcactccagagcagcttctccttcaactgaagtacagatatgatgta
gaggtggaccacagccgcagaccggctctgagaaagatcatggaaaaggacgacacatca
gccaaaaccctggtcctgtgtgtgtgcggggtcgtctccaggggccactccacaaaccga
cagagtttcagtgacaccaagactcctccagatgctgaagccaaggttgaaaacccatct
gcagttgtgtggctgacagatggatggtacgccattaaagcccagctggatgaacctttg
actgccatgctccacaaaggtcgagtggctgtgggggggaagctgatcatccacggggct
cagctggtgggatcacaggatgcttgctctcctctggaggcacctgaatctctcatgtta
aagatatgtgccaacagcagccgtcccgcacgatgggatactaagctgggatttcacaag
gatccacggccattcctgcttcctatctccagtttgtacagcaatggaggaccggtagga
tgtgtggacattattttcctgagaagctaccccatacagtggatggagaggaaaacagat
gcaggggctgtgtttcgctctgttcgtgcagaagagaaggaggcgaggcaacacgacagc
aacaaacaaaaagctatggagatcctgtttgctaagattcaagctgaatttgaaaaggag
gacaaaggtaatagcagacctcagcgtagaagacggacaatcagtcgtcaaagtattgca
ggtcttcaagatggagaggagctgtatgaagcagtgggggatgacccagcgtatctggag
gctcaattgagtgaacagcagttggagactctacgtagctacagatgttctctgatggaa
aagaagcaggctgacctgcaggatcgcttcagacaagctttagaaaatgcagaggagagc
gaaggcagctgtcccaagagagacgtcactcctgtgtggaggctctgcctcgcggacctc
atggaccaacctggcagtgtctaccagctgaacttttggcgaccttcctcggatcttcag
tctttactgaaggaaggcagtcgatacaaagtctataatctcaccacttcagacggaaag
aaacatgttggtaacacaactgttcagctgactgggacaaagaaaacacagtttcaggac
ctcccggtctctcaggaatggttatcaacacattttcaaccgagagtctctacccatttt
gtggatcttcaaaacacagaactgcagccgcagtgtggagaagttgatctcacaggatat
gtcatcagcatcgtagatggacagggtttctctccggcattttatctgactgatggggaa
atgaactttgtcaaagtgcgctgtttcagcagctttgctcagtctggcttggaagatttg
gtaaagccaaatgttctgttggctctgagcaacctgcagctgagaggtcagtccacatct
cccacgcctgttgtgtacgctggagatctgaccatcttttccacaaaccccaaagaggtt
catctgcagaaatctctctgccaactcagaaaactggcccagggtcaggatagcttcttt
acaattgctgaggagaagctttcacatttagggaaatctgatggcacgagttccttctct
tctccagctctgcaaacacgaaacacagctttcacaacagtcagaagactggacacatac
acaagtgtgacatctcagcagccagtccgaagccttggatccttcacacctgtcagcagg
aagcctcctgcagcaaactgctccacagagaaagaccccaacagcctgaagaagaggaga
gctctggactatctgtctcgtatcccgtcccccccacctctttccccgtttggcccagtg
gcttctccatgtgtaaatacgacattcaacccccctcggaggtctgggacacctagcact
ttaaaaactgtacagactccagctcagacacctgttgaaactccagtggaggatgagtgg
gtgaatgatgaggaactagctatgattgacactcaggacttacatgttgctgatctactg
tag
DBGET
integrated database retrieval system
