Pseudochaenichthys georgianus (South Georgia icefish): 117457317
Help
Entry
117457317 CDS
T09629
Name
(RefSeq) coatomer subunit beta'-like
KO
K17302
coatomer subunit beta'
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117457317
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pgeo04147
]
117457317
Membrane trafficking [BR:
pgeo04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
117457317
Exosome [BR:
pgeo04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
117457317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_HPS5
ANAPC4_WD40
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_LRRK2
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Clathrin
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
117457317
NCBI-ProteinID:
XP_033953209
LinkDB
All DBs
Position
13:complement(40651488..40676367)
Genome browser
AA seq
1213 aa
AA seq
DB search
MPLRLDIKRKLSARSDRVKSTDLHPTEPWMVASLYSGTVVVWNHETQMMVKTFELCDLPV
RVAKFVARKHWVIAGADDMQIRVFNYNTLERVHMFEAHSDYIRCIVVHPSQPYILTSSDD
MLIKLWDWERKWTCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSKTPNFT
LEGHEKGVNCIDYYNGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVTCVCFHPE
LPIILTGSEDGTVRVWHSNTYRLENTLNYGMERVWCISGQAGSNSVALGYDEGSIIIKMG
REEPAMSMDSSGKVMWARHSEVQQANLRTMGEAEVKDGERLSLGVKDMGSCEIFPQTIQH
SPNGRFVVVCGDGEYIIYTAVALRNKSFGSAQEFVWAHDSSQYAARESGSMIKIFKNFKE
KKAFKPDFGAEGVFGGFLLGVRSNSGLAFYDWDNTELIRRIEIQPKHIFWSDSGELVCIA
TDESFFVLRYLPERVAAAQENKEDVTEDGIEGAFEVQGEVSEVVKTGVWVGDCFIYTSSL
NRLNYYVGGEIITIAHLDRTMYLLGYIPKDDRLYLGDKELNVISYALLLSVLEYQTAVMR
RDFSTADKVLPTIPKEQRTRVANFLEKQGFKQQALAVSTDPEHKFELALQLGDLKIAQQL
ASEAESEQKWKQLAELATTKCQFGLAQECLHNAQDYGGLLLLATASGNSTMVGKLAEAAE
RDGKTNVAFLTYFLQGRLDKCLDLLIATNRLPEAAFLARTYLPSHVSRVVKLWKASLSKV
NQKAADALADPSQYSNLFPGLQQALLAQEFLKDTHVGIRPAAEYPLIVPNENRNVLEESA
GFVSKGEIDEPEGGVESMDEPMMEAAVTAAVLAEPAATEELLPVKQEILEPVRATEEESI
PTSASPLPVPLPEEHVEPKQAESVSFDEDIISNPEEAAEEDMLDFTTETPPTEPQMVQPS
PVEYATAVHVSETHRIETTSETIVATEEIETVATETIATEDVLVSTGLIVDTEVIETGIE
ELDTPLISIEASSIFDTAAEESPVTEELVSETSAVAVEELISFESATSPEWDVPVQVQTC
PEWDVPVQVQTCPDAPLDPLLEPLEDTVPTLKPLPAQEPEQGEDVKPAAPPQADPPQADP
PQADPEPSPPVAAPAEGKAAEEEKEYGAEGAEEPPEDLEDEMIDEGLDDLDLDNFDLEDI
DTSDINLDEDLSD
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgcggttggacatcaagcggaagctgtcggctcgctcagaccgggtgaagagc
accgacctgcaccccactgagccctggatggtggccagtctgtacagcggcaccgtggtg
gtgtggaaccatgaaacacagatgatggtgaaaaccttcgagctgtgtgacctgcctgtc
cgagtggccaagtttgtagccaggaagcactgggtcatcgccggagcagacgatatgcag
atccgagtgtttaactacaacactctggagcgagttcacatgttcgaggctcactccgac
tacatccgctgcatcgtggtgcatcccagccagccctacatcctcaccagcagcgacgac
atgttgatcaagctgtgggactgggagaggaagtggacgtgcagtcaggtgtttgaggga
cacactcactacgtcatgcagatcgtcatcaaccccaaggacaacaatcagtttgccagc
gcctctctggacagaaccattaaggtgtggcagctcggctccaagacccccaacttcact
ctggagggccacgagaagggagtgaactgcatcgattattacaacggaggagacaagccc
tacctcatatcgggggccgacgaccgcctggtcaagatctgggattatcagaacaaaacg
tgtgttcagacgttggagggtcacgcccagaatgtgacctgcgtgtgtttccaccccgag
ctgccgatcatcctcaccggctccgaggacggcactgttcgggtgtggcactccaacacc
taccggctggagaacaccctgaactacggcatggagcgggtctggtgtatctctggacag
gcggggtccaacagcgtggcgctgggctacgatgaaggcagcatcatcatcaagatggga
cgggaggagccggccatgtccatggactccagtgggaaggtgatgtgggcgcgtcactcc
gaggtgcagcaggccaacctgaggaccatgggggaggcggaggtgaaggacggggagagg
ctgtctctgggcgtcaaggacatgggaagctgtgagatcttcccgcagaccatccagcac
agccccaacgggagatttgtcgtggtgtgtggcgacggagagtatatcatctacaccgcc
gtggctctgaggaacaagagcttcggctcggctcaggagttcgtctgggcccacgactcc
tcgcagtatgcagcgagagagagcggcagcatgatcaaaatctttaagaacttcaaagag
aagaaggcgtttaagcccgacttcggggctgaaggtgtctttggaggcttcttgctgggc
gtgaggtcgaacagcggcctggccttctacgactgggataacaccgagctgatccgccgc
atcgagatccagcccaaacatatcttctggtccgactccggggagctggtgtgcatcgcc
acagacgagtctttctttgtgctgcgttaccttccggagagagtggccgcggctcaggag
aacaaggaagacgtaaccgaggacgggatagagggcgccttcgaggtgcagggggaggtc
tctgaggtggtgaagacgggggtctgggtgggagactgcttcatctacaccagctctctg
aacagactcaactactacgttggaggagagatcatcaccatcgctcacctggacaggacc
atgtacctgctgggctacatccccaaggacgaccgcctgtacctcggagacaaagagctg
aacgtcatcagctacgccctgctgctgtccgtgctggagtaccagacggccgtcatgagg
cgggacttcagcacggccgacaaggtgttacccacaatccccaaggagcagaggaccaga
gtagccaacttcctggagaaacagggcttcaagcagcaggccctggccgtgtccactgac
ccagaacacaagtttgaactggccctgcagctgggagacctgaagatagcccagcaactg
gcctccgaggcagagtcggagcagaaatggaagcaactggcggagctcgctactactaag
tgccagtttggcttggcgcaggagtgtctgcacaacgcacaggattatgggggattattg
ctgctggccaccgcctcgggcaactccaccatggttgggaaattagccgaggcagcggaa
agagatgggaagaccaacgtggcgtttctcacctacttcctgcagggacgattggacaaa
tgtctggaccttctcatcgcaacaaatcggttgccagaggctgcttttctggcacgaaca
tatctgcccagccatgtgtcgagggtggtgaagctgtggaaggcgagcctctcgaaggtc
aaccagaaggcagcagatgctctggctgacccctcccagtacagcaacctgttccccggc
ctccagcaggcgctgctggcccaggagtttctgaaggacactcatgttgggatcagaccg
gctgcagagtacccgctcatcgtgccaaatgagaaccgtaatgttctggaggaatctgca
gggtttgtgtccaaaggagagatcgatgagccagagggaggggtggaaagcatggatgaa
cccatgatggaagcagcggtgacggcagctgttctagcagaacccgcagcaacggaggaa
cttcttccagtaaaacaggagatcctcgaacctgtccgagcaacagaagaagaatccatc
ccaacatcagcatcccctcttcctgtcccactaccagaagagcatgtcgagccgaaacaa
gcagagtctgtgtcctttgacgaggacatcatctctaacccagaggaggctgcagaggaa
gacatgttggacttcaccaccgagaccccccccacagagccacagatggtacagcccagt
cctgtggaatatgccaccgccgtgcacgtatccgagactcatcgaatcgagacgacatca
gaaaccatcgtggcgacggaagaaattgagacggtggcaacggaaaccatagcaacagag
gatgtcctagttagcactgggctgatagtcgatactgaagtaatagaaactggtattgaa
gaactggacacacctttaatctccatagaagcatcaagcatcttcgatacggcagcagag
gaaagtcctgttaccgaggaacttgtttcagaaacatcagccgtagcagtggaggagctc
atctcctttgaaagcgccaccagtccagagtgggatgtgcctgtccaggtccaaacgtgt
ccagagtgggatgtgcctgtccaggtccaaacgtgtccagatgcgccccttgatcctctg
ctggagccacttgaagatacagtgccgacgctgaagccactccccgcacaagaaccagaa
caaggtgaagacgtgaagcctgctgcgcctccacaggctgaccctccacaggctgaccct
ccacaggctgacccagagccttcacccccagtagcagcgcctgcagaggggaaagcagca
gaggaggagaaggagtacggcgctgaaggagctgaggaaccaccagaggacctcgaggac
gagatgattgatgagggcctggatgatctggatctggataattttgacctggaagacatc
gacacctcggacatcaacctggacgaggatttgagtgattag
DBGET
integrated database retrieval system
