Pseudochaenichthys georgianus (South Georgia icefish): 117457464
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Entry
117457464 CDS
T09629
Symbol
trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117457464 (trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pgeo04121
]
117457464 (trip12)
Enzymes [BR:
pgeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117457464 (trip12)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
HECT type E3
117457464 (trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
117457464
NCBI-ProteinID:
XP_033953461
LinkDB
All DBs
Position
13:complement(39909519..39958092)
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AA seq
2058 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQSEQVKHKANSPPESRRPNSKASKAA
ASSATGQSRGHSSRRSGLSLSVASFVLQDDPEAAGTSEQERPGQQSKSEGPRGLKRSEAP
DQISTFGPTPAKKPKALPAPRDNTSETKKGPAKSKKRSLASEPPASSGRGQSKKSGAAGA
SPIPKRKKADSLPGLSSTAGPLPNRTEGRTAKPTKLASKSAASAKAGCSNVTDSSSSAST
SSSSSTAGTNSATTQGARVKQGKDQTKARRSRSASSPSPRRSTRDKEQAKATSSSKFEWA
ARFNPKVNLPKPKLSLPGSSKPETSKPGPSGLQAKLASLRKSTKKRSESPPAELPSFRRS
TRQKTTGSCASTSRRGSGLGKRGAADARRQEKMADSDNNQDGANSSAARTDEASQGASAS
SSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGASS
KAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHNFD
IMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHSKA
ILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTHQDK
KSVESTCLCFARLVDNFQHEENLLQEVASRDLLTNIQQLLVVTPPVLSSGMFIMVVRMFS
LMCSNCPCLAVQLMKQNIAETLRFLLCGASNGSCQEQIELVPRSPQELYELTSLICELMP
CLPREGIFAVDVMLKKGSAQTTEGAIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEISL
STLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPNTGGHQEVRREDARAQLMKDDPE
LAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIFFADAELLKDVLRNHSVSSHIAS
MLSSQDLKIVVGSLQMAEILMQKLPDVFSVYFRREGVMHQVKNLSESESFLVTSPPKACP
SGTASLCTTTISTASTTSANNATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKRG
PRRPKYSPPRDDDKVDNQAKSPTSTQSPKSSFLASLNPKTWGKLGAQTNNANSEPSRTAG
VSGLARAPPKDSISNNRDKIKAWIKETASKFVERYFSSENVDGSNPALNVLQRLCTATEQ
LNLQVDGGIECLVEISSIVSESDVSSFEIQHSGLVKQLLVYLTSSSDRELLSRDVRLKRF
LHVFAGCPVPGMELAGRLDPTENAPYLALVHKMNSCLSQMEQFPVKVHDFPSGNGNGSRG
SQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREED
EDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQYSLQAEEER
ESTDDEANPLGRAGIWTKTHTIWYKPVREDEDGSKDAVGGKRGRAQTAPTKTSPRNAKKQ
DELWHDGVCPSVVNPLETYLTSEPPENITFEDPSLEVNLLLRVLHSISRFWFYLYENAVC
KEIIATSEFINSKLTAKANRQLQDPLVIMTGNIPTWLIELGKTCPFFFPFDTRQMLFYVT
AFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINRDELLKQAESVMQDLGSSRA
MLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLANPKGSHEGTKYMFSSR
GLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRHEMSIS
SHDLVNIDPGVAKSIQHLEDIIRQKKRLEQDRSQTRETLQQGLESLNMNGCSVEDLGLDF
TLPGYPNIELKKGGKDFPVTIYNLEEYLRLVVYWTLNEGVSRQFESFREGFESVFPLHHL
QYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSSFDAEQQRLF
LQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIDIM
REKLLIAAREGQQSFHLS
NT seq
6177 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccacacagttgcaggaaggttgcagtcagagcaagttaaa
cataaagcaaattccccacccgaaagtagaagacctaattctaaggcttccaaagccgca
gccagctcagccactggccagtccagagggcacagctcaagaagaagcggtctttctctg
tcagtggcttcatttgtgttgcaagacgacccggaggcagcagggacatccgaacaagag
cgaccaggccaacagtcgaagagtgaaggcccccgagggctgaagcgaagcgaggctccg
gaccaaattagtaccttcggacctacccctgccaagaagcccaaagcactcccagcaccc
agagacaatacctctgagaccaagaaaggaccagcgaagtccaagaagcgatcacttgct
tcagaaccacctgcatcgtcaggtcgaggccagagcaagaagagcggggccgccggggcc
tcaccaatcccgaaacggaagaaagcggactccctccccggtctaagtagcaccgctggg
cccctccccaatcgtaccgagggcagaactgcaaaacccaccaagctggcgtcaaaatcg
gccgcctcagccaaagctgggtgtagcaacgtgacggactcctcctcttctgcctccacc
tcttcctcttcctccaccgcaggcacaaacagcgccaccacgcagggcgcccgagtcaaa
cagggaaaagatcagaccaaggcacggcgctctcgctcggcctccagcccctccccacgc
cgcagtacccgtgacaaggagcaggccaaggccaccagctcttccaagttcgagtgggca
gctcgcttcaaccccaaagtcaacctgccaaaacccaaactgtccttgcccggatcctcc
aaacctgagacctccaaacctgggccatcaggattacaagctaaactagcaagtttgagg
aaatccactaagaagcgcagcgagtctcctccagcagagctccccagctttcggcggagc
acacgccagaagaccacgggctcctgtgccagcaccagtcggcggggctcaggcctgggc
aagcgcggggcagccgacgctcgccgacaggagaaaatggccgactctgacaacaaccag
gacggggccaactcgtcagctgctcgcactgatgaggcatcacaaggggcttcagcttca
agctcagttgctggagcagtgggcatgaccacctctggagagagtgagtctgatgactct
gaaatgggaagacttcaagccctactggaggccaggggtctccccccacatcttttcggg
cccctgggaccccgcatgtcgcagctgtttcacaggaccattggcagtggagcgagctcc
aaggctcagcagctcctgcagggtcttcaggccacaggcgacgagtcccagcagctccag
gctgccatcgagatgtgccagctgctggtgatgggcaacgaggaaacactcggtggattc
cccgtcaagagtgtggtgcccgctctgattacactgttgcaaatggagcataactttgat
ataatgaaccacgcctctcgtgcactcacgtatatgatggaggcgctcccccgctcctct
gctgtggtggtcgatgcgatccctgtcttcctggagaagctgcaggttatccagttcatt
gacgtagcagagcaggccctgaccgccctggagatgttgtcaaggcgacacagcaaagcc
attttgcaggctggggggctcgccgactgcctgctgtacctggagttcttcagcatcaac
gctcagaggaacgccctggccatcgcagccaactgctgccagagcatcactcccgacgag
ttccactttgttgctgattctctgccactgttgactcagagactcacacaccaggataaa
aaatccgtcgaaagcacttgcctctgtttcgccagactggtggacaactttcagcacgag
gagaaccttctgcaggaggtggcgtcccgtgacctgctgaccaacatccagcagctgctg
gtggtgacgcctccggtgctcagctcggggatgttcatcatggtggtgcgcatgttctcc
ctgatgtgctccaactgcccctgcctggcagtccagcttatgaaacagaacatagcagaa
actctgcgcttcctcttgtgtggtgcatcaaacggcagctgccaggagcagattgaactg
gtaccccgcagcccccaggagctctacgaactgacctccctcatatgtgagctgatgccc
tgcctgcccagagagggcatcttcgcggtggatgtgatgctgaagaagggcagcgctcag
accacagagggcgccatctggcagtggagggacgaccgcgggctgtggcatccctacaac
cgcatcgacagccgaattattgagacagcacaccagaacggggaggatgagatcagcttg
tcaaccctgggccgtgtgtacacaattgactttaactctatgcagcagatcaatgaagac
acaggaacagcacgtggtatccagaggaaacccaatcctcttgccaaccccaacacaggg
ggtcaccaggaggttcgtcgagaggatgcacgagcccagttgatgaaggatgaccccgag
ctggcaaagtgctttatcaaaactctgttcggggtcctgtacgaggtgtacagctcgtca
gccggccctgctgtcagacacaagtgccttagagccatcctcaggatcatcttctttgct
gatgcagagctgctgaaggatgtgctgaggaaccactctgtgtccagtcacatcgcctcc
atgctgtccagccaggacttgaagattgtagtggggtctctgcagatggctgagatcctc
atgcagaagctgcctgatgtcttcagtgtttacttcaggagagaaggtgtgatgcaccag
gtgaagaacctgtccgagtctgagagctttctagtcactagccccccaaaggcttgcccc
agtggtactgccagtttgtgcacgaccaccatcagcactgcctccactacatctgctaac
aatgcaactcctgacctgggctcgcccagcttccagcacagcatggacgactccctggac
ctcagcccacaggggcggttaagtgacgtcctgaagaggaaacggctacccaaaagagga
ccgagaagacctaaatactctcccccaagagacgatgataaagtagacaatcaggccaag
agccccaccagtactcagtcccccaaatcctccttcttggccagtcttaacccaaagacc
tggggcaagctaggagcccagaccaacaacgccaactcagagccgtcgcgcacagcgggg
gtcagcgggctggcgagggccccgcctaaggactcaatttcaaataacagagacaaaata
aaagcctggatcaaagaaacggccagtaagtttgtggagcgctacttcagctctgaaaat
gtggatggcagcaaccctgccctgaatgtactccagagactttgcacggccacggagcag
ctcaacctgcaggtggacggtggcatcgagtgcctggtggagatctccagtatcgtatcg
gagtccgacgtgtcgtcctttgagatccagcacagcgggctggtgaagcagctgctcgtc
tacctgacctccagcagcgacagggagctgctcagccgcgacgtccggctcaagaggttc
ctccacgtgttcgctggctgtccggttccaggcatggagctggcaggtcgcctggacccg
acagagaacgctccgtacctggcgctggtgcacaaaatgaacagctgcctgagccagatg
gagcagtttccggtcaaagtgcatgatttcccgagtggcaacggcaatggcagcaggggc
tctcaggcgctgaagttcttcaacacacatcagctgaagtgccagctgcagagacaccca
gactgcactaatgtgaagcagtggaagggcggccctgtgaagatagaccccctggccctg
gtgcaggccatcgagagatatctggtagtcagagggtacggccgaatcagggaagaggat
gaagacagcgatgacgatggttcagatgatgaaatcgatgaatcgctggcggcgcagttc
ctgaactcgggcagtgtgcggcacagactacagttctacatcggtgaccacctgctgccg
tacaacatgacggtgtaccaggccgtgaggcagtacagcctgcaggcagaggaggagcga
gagtcgacggacgacgaggcgaacccactcgggcgagctggcatttggaccaaaacgcac
acaatatggtataagccggtgagagaggacgaggacggcagcaaagacgctgtgggtggg
aagcggggccgagcccagactgctcccaccaagacgtcccctcgcaacgccaagaagcag
gatgagctgtggcatgacggcgtgtgtcccagtgtcgtcaatcccttagagacatacctc
acttcggagccaccggagaacattaccttcgaagacccctctttggaggtcaacctgctg
ctgagggtcctgcactccatcagcagattctggttctacttgtatgaaaatgctgtgtgt
aaggaaatcatcgcgaccagtgagttcattaacagtaaactgacagccaaagctaaccga
cagcttcaggacccgctggtcatcatgacggggaacatccccacctggctcatcgagctc
ggaaagacctgtcctttcttcttccccttcgacacccggcagatgttgttctacgtcact
gccttcgatcgggacagagccatgcagcgtctactggacacaaaccctgagatcaaccaa
tcagattctcaggacagcagggtggcccctcgtctcgacaggaagaagaggacgataaac
cgcgacgagctgctaaagcaggcggagtctgtgatgcaggacctgggcagctccagggcc
atgctggagatccagtacgagaacgaggtgggcacaggtctgggcccgactctggagttc
tacgctctggtgtctcaggagctgcagcgcgccgacctcggcctgtggagaggggaggag
gtcactctggccaatcctaaaggaagccatgagggaaccaagtacatgttcagctccaga
ggactgttcgctgttcccttcggcaggacaaccaaaccagcacacatagccaaaatcaaa
atgaagttccgattcttaggaaagctgatggccaaagccataatggacttcagattgctg
gaccttcctctcgggctgcccttctataagtggatgctgcggcacgagatgtccatcagc
tcccacgacctggtgaacatcgaccccggggtggccaagtccatccagcacctggaggac
atcatccgccagaagaagcggctggagcaggaccggtcacagacaagggagaccctgcag
cagggcctggagagcctgaacatgaacggctgctcggtggaggacctcgggctggacttc
accctcccaggataccccaacattgagctgaaaaagggcggcaaagacttcccggtcaca
atctacaacctggaggagtacctcaggttggtggtgtactggactctaaatgaaggagtg
tccagacagtttgagtcatttagggaaggctttgagtcggtcttccccctgcaccacctg
cagtatttctatccagaggagctggatcagctgctgtgtggcagcaaatcagagacgtgg
gacgtgaagacgctgatggagtgctgtcgaccggaccacggctacacacacgacagccgc
gccgttcggttcctgttcgaggtgctgagcagcttcgacgccgagcagcagagactcttc
ctgcagtttgtcacaggaagccccagactgcccgtcggtggtttccggagcctgaacccc
cctctgacgatcgtgaggaagacattcgagtcgacggagaacccggacgacttcctcccc
tcggtgatgacgtgtgtcaattacctgaagctgcctgactactccagcattgacataatg
cgagagaaactgttgatcgcggctcgagagggccagcagtccttccacctctcctga
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integrated database retrieval system
