Pseudochaenichthys georgianus (South Georgia icefish): 117457699
Help
Entry
117457699 CDS
T09629
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1 isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117457699 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117457699 (scarf1)
Membrane trafficking [BR:
pgeo04131
]
Endocytosis
Phagocytosis
Scavenger receptors
117457699 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
Motif
Other DBs
NCBI-GeneID:
117457699
NCBI-ProteinID:
XP_033953797
LinkDB
All DBs
Position
13:28220704..28228717
Genome browser
AA seq
918 aa
AA seq
DB search
MKLLLGALSALLCCSLSSSQTLDPAGKNVCHNIRDPSTLVCCTGWRQEGTECTLPVCEGE
QACLKEEICVYPGVCRCPPGYFGAHCKTRCPGEFWAADCRKVCECFPHGRCHPVTGECTC
NPNRWGPLCQSPCKCVRHGHCHPVHGNCSCDEGWWTATCSKPCQCGSAGSAGPGCDQLTG
RCQCNRGHWGLKCPVACNCYLSQCNQRTGVCECEAGWWGPSCDRRCNCDLTHSTCDPNTG
QCLCQPGYQGVYCNQPCEAGKYGSGCKRSCGFCRDHRTCSDTDGACDACESGWNGTRCDR
PCPAGSYGDGCLEECPRCRNNEPCDPKTGNCWRCDPGCTGPRCEEACTNRTFGDACGFLC
SPCFHGDCHQVTGRCDCQSGFTGESCNSSCPALQFGFNCSSACDCGEGGGCDPVTGVCPK
SGRAAVIAGVLVPLLLLLLAVLCCCLCCGGAPAGGKDRATMAEGGWSVRMKYHVYSVLAN
IGAALPCISDWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTEGSSFDSDEEEEEGEAL
YCVPPRDDFPSVAGGEFHEMSSKCNMFMDPSGFSCEDITSPFNIPRTSSIAKSKRPSVSF
AEGTRFSPKERHGSAQDLASLPGHLRNKPKSPWGVLMLSALQSQGSASKTAQEDGAEDHE
GDDDGDVQETEYEETNYDAEDQEVDRTASRTTLQVPGASGRRRTMSNTAAHKGTQLLTPA
SDAQGGVLNKVTTVYVTVGKAGRLVSKTETSSEGPVQAMLRRIGSLQRQREQEVSRPKPK
GAEAIVKPPRRKLGARASVWEEGAPPAGEVGICKPIRRKHASVNTPDTAGANDTSSESGS
PKRPLSILKSVPELALADSGSDLRAEGSDPTSGKTEGPYLTVGAAGDAESLTEVIANEGA
VVSVNDEPCYENVIIKHT
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttctcctcggagctctgagtgctctgctctgctgctcgctgtcctcctcacaa
acactggatcctgctgggaaaaacgtctgccacaatatcagggacccctccaccctggtc
tgttgcactgggtggcgtcaagagggaacagaatgcaccttacctgtgtgtgagggtgag
caggcctgtctgaaggaggagatctgtgtgtatcccggagtgtgtcgctgcccccctggc
tacttcggagctcactgtaaaacacgctgtcccggtgagttctgggctgcggactgtcgc
aaggtgtgtgagtgcttccctcacggccgctgtcaccccgtcaccggagagtgcacctgc
aaccccaaccgctggggcccgctctgccagtcgccctgcaagtgcgtccggcacggccac
tgccaccccgtccacgggaactgctcctgtgacgagggctggtggacggccacctgctcc
aagccgtgccagtgcggcagcgcggggtctgcggggcccggctgcgaccagctgacaggc
cggtgtcagtgcaacaggggccactgggggctgaaatgtcccgtcgcttgcaactgctac
ctgtcccaatgtaatcagcgaacaggtgtgtgtgagtgtgaggcaggctggtgggggccc
agctgtgaccggaggtgtaactgtgacctcacacacagcacctgtgacccgaacactgga
cagtgcctgtgccagccggggtaccagggggtctactgcaaccagccctgtgaagctggg
aaatacggcagtggctgtaaaaggagttgtgggttctgcagagaccaccggacctgctcg
gacactgacggcgcctgtgacgcctgtgagtccggctggaacgggacacgatgcgaccgg
ccgtgcccggctggttcctatggtgacggctgcctggaggagtgtccacgctgcaggaac
aacgaaccctgtgacccaaaaactgggaactgttggaggtgtgatccgggatgcactggt
cccaggtgcgaggaggcctgcactaacaggacgtttggagacgcctgtggtttcctgtgt
agcccatgtttccatggtgactgtcatcaagtgacaggaagatgtgactgtcagtccggc
tttacaggagaaagctgtaacagtagctgccccgccctgcagttcggcttcaactgttcc
tccgcctgtgactgtggggaggggggcggctgcgacccagtcactggagtgtgtcccaag
agtggcagggctgcagtgatagcaggtgtgctggttcctctcctcctgctgctcctcgct
gtgctctgctgctgtttgtgttgtggaggggctcctgccgggggcaaagacagggcgact
atggctgagggaggctggtcagtccggatgaagtatcacgtctacagcgtcctggctaac
atcggagcggccctgccctgtatctctgattggtcctctggcctgccccgtgtcacagtg
tctcaccatgacccagagctgacgttcaaccacagcttcattgagcctccgtcgtctggc
tgggtgacggaggggtcgtccttcgacagtgatgaggaggaggaggagggggaggcgctc
tactgtgtccctcccagagatgacttcccttcggtggcgggcggcgagttccacgagatg
agctcgaagtgcaacatgttcatggacccctccggcttcagctgtgaggacatcacctcg
cccttcaacatccctcgcacctccagcatcgccaagtccaagcggccttctgtttctttt
gcagaggggacccgcttcagccccaaagagaggcatggctcagctcaggacctcgcctct
ctccctggtcacctgcgaaacaaacccaagtcaccctggggtgttctgatgctgtctgct
ctccaaagtcaaggaagtgcctctaaaactgcgcaggaagatggagctgaggaccatgag
ggtgacgatgatggggatgtgcaggagacagaatatgaggaaactaactatgatgcagag
gaccaggaagtagacaggaccgcttcccggaccaccctacaggtccctggtgcctcagga
cgaaggaggactatgtccaacacagctgctcataaagggacccagctgctgacacctgcc
tctgatgctcaggggggggtcttaaataaggtcaccacggtgtatgtgacggtgggtaag
gcagggaggctcgtgtccaagacggagacgagctctgagggtcccgttcaggccatgctg
cggcgcatcggaagccttcagagacagagggagcaggaggtaagcaggcccaagcctaaa
ggagcagaagctatcgtcaaaccccccaggaggaagctgggagcgcgggcgagcgtgtgg
gaggagggggcgccgcctgcgggggaggtaggaatatgtaagccaatcaggagaaagcat
gcttctgttaacacccctgacacagctggtgcgaacgacacatcctcagagagcggctct
ccaaaaaggccgctgtccattttgaagagcgtgccagagctggctttagctgactcaggg
tcagatctgagggcggagggcagcgaccccacctcgggaaaaactgagggcccctacctg
accgtgggagcagcaggagatgcagagagtctcactgaggtcatcgccaacgaaggagcg
gtggtcagtgtgaatgacgagccctgctatgaaaatgtcataattaaacacacatga
DBGET
integrated database retrieval system
