Pseudochaenichthys georgianus (South Georgia icefish): 117458025
Help
Entry
117458025 CDS
T09629
Name
(RefSeq) thrombospondin type-1 domain-containing protein 1-like
KO
K24433
thrombospondin type-1 domain-containing protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
117458025
Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
117458025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THSD1_N
THSD1_D3
PTEN_C2
Ion_trans
TSP_1
THSD1_D2
DSPc
Tc-R-P
TSP1_spondin
PTP-SAK
PTP-NADK
Y_phosphatase
TSP1_ADAMTS
PTPlike_phytase
PKD_channel
PTEN2_C2
TSP1_CFP_C
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
117458025
NCBI-ProteinID:
XP_071061460
LinkDB
All DBs
Position
14:20636869..20654361
Genome browser
AA seq
1470 aa
AA seq
DB search
MPQAVSLLPFLLALMGYAFAGLNIWPSLHVALSNASVFVDFSTKSNSSTACTTSLSLVNT
ETNTTVQTRTLPDNQSAGRVEFNCSCFLYAGTFRFQLRQTSNSAVSPANGTHDSRVESTT
WWWSSELQVQWPTFHIAVDRAGNHSGSFQVGISTNEHFQACSSGIDSALLLEVSYMEYNQ
IGRITIDKVKARKQYSIKPLRSQSVKLSCAFPFTERDFIRVSLRSPHAAQDVKSSGPLYL
SRIFSYKLLVENTNAYRSGCEGTMTVKLITPPCVQVNGKVMLYKDAGVGRGVAVSSGMDA
GGTAPGPEEPSSPLLAYNWLTQGENETEFNCSVFDPGRYKYCFRFVFNFSRSPSPAQTCL
VVHKSAESWGPWLPWSVCSVSCGEGVRERERECLLPSGVGGMQCTGMVKEQSLCSLESCV
VLPTPSPSLPPVGVGAAPLGGNIVVVAGISLCLAVILATVVVTLWRKLCKTPQCNSVRRG
SMHSPGGRKLSDEASIFGHSLQRPSLIDGHGLQGGIGVGVGVAQKDRPSLGSQPLPQTLV
VPLSQDPERLSPTCQKLLPPIFGYRLAQQQLKEMKKKGIREAIQLYHVSSSPVHDTLVET
SASPTSSLIPTPTGFTHPAIPLDLQDDANHNYFQSQTPRAMPDRLSPRVELVLGPSASAH
ARGGSSNRRDRTADWVEMVERSGLSGPRGGAGDAEMGNSYHKNPNFRRTSSFNDTKPQPL
SSVHSRQFRERSMTQVGSRTFPEGSCWNKGGRDWQPYSSYPIPEHGTPDWAKSRPQRNDQ
RKPWIDTAATSHNNEIKHTGANTNSISASEKHVKADLSGAGGGQGISGIGGPAAGPQHLS
VDRAERAEQNWNRRGPSPIQRNILARKLKEAQSCSGVRGRQRSSTFSATPTEQRTGRCNS
LPMSGGYRLSEAEQRMLDLDLSSAYVGEEEYHKTNSRKIIRMTVLTTARSEQSKKEDILI
MSSVYFSPGSDSGVNGNVAKMEDANVKIEDGKDDSVDPDTMYHNFRKTIAPFVMSFGFRI
FGVILIIVDFVLVVVDLALPTKSREVGDVIEAVSLIISLFFLADVLLRVYVEGFKVYFSS
KLNIIDACVVAITLVVTMVYTFSDLSGADLIPRVVTFFRFLRIIILVRVFRLAAQRKELE
KVTRRMVSENKRRYQKDGFDLDLTYVTDRVIAMSFPSSGKQSFYRNPIREVARFLDTKHE
DHYKVYNLCSEKGYDPQFFHYKVERVFIDDHNVPALEDMLKYTANVREWMSADPKNIIAI
HCKGGKGRTGTLVCTWLIDSDQFESAQDSLDFFGERRTDKSQSSKFQGVETPSQSRYVGY
YEVMKTKFNRQMPPPKSLRIKSIRIHSISGVGKGNGSDLMVKIIVKKELVFQCVCAKQEN
CAVFPDVGSNAAVISLLNGPVVEGDVKVMFESSAGLPKGYEDVPFYFWFNTSFIEDNKLF
LPREELDNPHKPKTWNLYKEDFGVSMIFSE
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atgccacaagctgtctcactgctgcccttcctgctggcgctcatgggatatgcttttgca
gggctcaatatctggccctccttgcacgttgcccttagcaatgccagtgtatttgtggac
ttcagcacaaaatccaacagcagcacggcctgcaccacgagcctctctctggtcaacacg
gaaaccaacaccaccgttcagaccaggactctccccgacaaccaatcggctggcagggtg
gagttcaactgttcttgcttcctgtacgcaggaactttccggttccagttgaggcagacc
agcaactcggctgtttctcctgctaatggcacacatgacagtcgagtggaaagtactacc
tggtggtggagttcagaactgcaggtgcagtggcccacctttcacatcgctgtggacagg
gccggaaaccactcgggatcttttcaggttgggatatccaccaatgaacactttcaggct
tgctccagcggtattgactcggctctcctcctagaagtcagctacatggagtacaaccag
ataggacggatcaccatcgacaaggtcaaagcccgcaaacaatactcaatcaaacccctc
cgctcccagagtgtaaagctgtcctgcgccttccccttcacagaacgagacttcatacga
gtgtctctacgctctcctcatgcagcgcaggatgtgaagagctccgggcctctctacctg
tcccgtatcttctcctataagctgctagtggaaaacaccaatgcctacaggagtggttgt
gaaggaactatgactgttaaactgataaccccaccttgtgtgcaagtcaatgggaaagtg
atgctttataaggatgcaggtgttgggagaggcgttgctgtctcctctgggatggatgca
ggaggaacagcaccaggaccagaggagccctcctcacctctgttggcctataactggctg
actcagggagagaatgagactgagttcaactgttctgtgtttgacccagggaggtacaag
tactgctttcgcttcgttttcaacttcagtcgttcccctagtcccgcacagacctgtttg
gtggttcacaagagtgcagagtcatggggcccgtggctgccatggagtgtgtgcagtgtg
agctgtggagagggggtgagggagcgagagcgcgagtgtttgctgccctcaggtgtgggg
gggatgcagtgcacgggcatggtgaaggaacagtccctctgctcactggagagctgtgtg
gtgttgcctactccttctccatccctcccccctgtgggtgttggtgcagcaccccttggt
ggtaacatagttgtggtggccggtatctccctttgcctggctgtgattctggctactgtt
gtggtgactttgtggaggaagctttgcaagaccccccagtgcaactctgtccgcagaggc
tccatgcattcccctggagggcgcaagctctccgatgaggcttccatttttggccacagc
ctccaaagacccagcctgattgatggccatggactacaggggggtataggtgtgggtgtg
ggtgtagcccagaaagacaggccttctttgggtagtcagcctctcccacagaccctggtt
gtacctctctcacaggacccagaaaggctttcccccacatgtcagaagctgttgccacca
atattcgggtaccgattggctcagcagcagttgaaagagatgaagaagaagggtataaga
gaggccattcagctctaccatgtctcttcaagcccagtccatgacaccctggtagagaca
tctgcttcgcccacaagctcgcttatccctacaccaactggatttactcaccccgcgatc
ccgttagacctccaggacgacgccaaccacaattattttcaatcgcagactcctagggcc
atgccggaccgactgagtcccagagtggagctggtcttaggtccttctgcctccgcccat
gcaagagggggcagctcaaataggcgggaccgcactgcagactgggtggagatggtagag
aggagtgggttatcaggtcccagaggaggagcgggagatgcagagatgggaaactcctat
cataagaatccaaatttccgccggacctccagtttcaatgacaccaaaccccaacctcta
tcctctgtacactccaggcagtttagagaaaggagcatgacacaggtgggatctcggacc
tttcctgaaggtagttgttggaataaaggaggacgagattggcagccatacagctcctac
cccattccagagcacgggaccccagactgggctaaatccagaccccagaggaatgaccaa
aggaaaccgtggatagacacagcggcgacttcacacaacaatgaaatcaaacacacaggt
gccaacacaaacagcatttcagcctctgagaaacatgttaaagcagacctcagtggtgct
ggaggtggacagggaatctctgggatagggggtccggcagcagggcctcaacacctgagt
gttgatcgggcagagcgggccgagcagaactggaaccgccgcggcccgtcgcctatccag
aggaacatcctggctcgcaaactaaaggaggctcagtcgtgctcgggggtcaggggccgg
cagcgcagctccacctttagtgccacgcccacggagcagaggacaggtcgctgcaactct
ctgcccatgtccggaggctacaggctgagtgaggccgagcagaggatgctggacctcgat
ctgtcctcagcatatgtaggggaagaggagtatcacaagacaaactcccgtaaaattata
cgaatgactgtcctaacgaccgcacgttctgaacaaagcaagaaggaagacattctcatc
atgtcctcggtgtatttcagtccagggtcagattcaggtgtaaatggaaatgttgcaaag
atggaggatgccaacgtgaagattgaagatggaaaggatgacagtgtggacccagacaca
atgtaccacaatttccgcaagacgattgcaccgtttgttatgtcttttggatttcgtata
tttggagtgatactgatcatagtggactttgtgctggtggttgtggacttggcactgcca
accaagagcagagaggttggagatgtcatagaagccgtgtccctcatcatctccttattc
tttctcgctgacgttctcctgcgggtgtatgtggaagggttcaaagtttacttcagctcc
aagttgaacatcatagacgcatgtgttgtggcaatcacgctggtggtcaccatggtctac
accttcagtgacctgtcaggagccgatctgatccccagggtggtgacgtttttccgtttc
ctgagaataataatcctggtgagggttttcagactggcagctcagaggaaagagctggag
aaggtcaccagaaggatggtttctgagaacaagcgtcgctatcagaaggatggatttgac
cttgaccttacctatgtgacggaccgtgtcattgctatgtctttcccctcctctggaaag
cagtccttctacaggaatccaatcagggaggtggcgaggttcctagacactaaacatgaa
gaccactataaagtttacaacctgtgcagtgagaagggctacgacccgcagttcttccac
tacaaggttgagcgggtgttcattgatgaccacaatgttcccgcgttggaggacatgctg
aaatacacagcaaacgtgagggagtggatgtctgctgatcccaaaaacatcattgccatt
cactgcaaaggagggaaaggacgcacaggtactctggtgtgcacctggcttattgacagc
gaccagttcgagagcgcacaggatagtttggacttttttggtgagaggaggacagacaag
agtcaaagctcaaagtttcagggagtagagacgccctctcagagtcggtacgtggggtac
tacgaggtcatgaagaccaagttcaacagacagatgcctccacccaagagcctcaggatc
aagagcatccgcatccactcaatttcaggtgtgggtaaaggtaatggcagtgatctcatg
gtgaagataattgtgaagaaagagctggtgtttcaatgtgtgtgtgccaaacaggagaat
tgcgcagtatttcctgatgtgggcagcaatgcagcagtcatcagtctactgaacgggcct
gtggttgaaggggatgtcaaagtcatgtttgagtcgagtgctggtcttccgaaaggatat
gaagatgttccgttctacttctggttcaatacctccttcatagaggataacaagctgttt
ctacccagagaagagctggacaaccctcacaaacccaagacctggaacctgtacaaggag
gactttggtgtgtctatgatcttctctgaataa
DBGET
integrated database retrieval system
