Pseudochaenichthys georgianus (South Georgia icefish): 117458177
Help
Entry
117458177 CDS
T09629
Symbol
nectin1a
Name
(RefSeq) nectin 1a isoform X2
KO
K06081
poliovirus receptor-related protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03266
Virion - Herpesvirus
pgeo04514
Cell adhesion molecule (CAM) interaction
pgeo04517
IgSF CAM signaling
pgeo04520
Adherens junction
pgeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
117458177 (nectin1a)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
117458177 (nectin1a)
04517 IgSF CAM signaling
117458177 (nectin1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
117458177 (nectin1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117458177 (nectin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117458177 (nectin1a)
04090 CD molecules [BR:
pgeo04090
]
117458177 (nectin1a)
Cell adhesion molecules [BR:
pgeo04515
]
Immunoglobulin superfamily
Nectin family
117458177 (nectin1a)
CD molecules [BR:
pgeo04090
]
Proteins
117458177 (nectin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2-set_2
V-set
Ig_2
Ig_3
I-set
ig
Ig_PVRIG
Motif
Other DBs
NCBI-GeneID:
117458177
NCBI-ProteinID:
XP_033954367
LinkDB
All DBs
Position
14:complement(19476498..19496013)
Genome browser
AA seq
501 aa
AA seq
DB search
MDSTGFWIFLITTCVIPGMNGQSVQMDDGRWGYIGSKVDLRCRFINSSPPVKISQVTWQK
LVNGTKQNVAIANPSLGVSVAPPFRDRVTFKNGAVRRRTPSLEDTTITFSTLRLSDESSY
ICEYTTFPAGNRENTVNLTVYVRPTTQISLSTPTLVARSSNLKTPVATCTCANGKPAGTI
RWETRVPGEATNREYRNSDGTFTVQSEYVLVPSKDTHKEMLTCVTSYNDEVFTDSVTLDI
QYEPDVVVDGYDGNWYLNRENVQLSCQADANPTVSLYQWRLVNGSIPSNAEIRDNVLTLK
GPITYDLQGTYVCDATNSIGTRSGSVEVSIIEKPLPQIATGDVISVVALLLAAGVLMGIT
ITVLVLKIRSKKGSSSNDSPSTKLSQTIRKRPADDIQHAGRFYEELPNTADYVSYRLACN
KEDYPEPYSPPINPPLSFLPQHPYPSSQPTPATSSSGNSTPKNTFSPPSHTMAIFKYPSV
PGMSSPPPGVAAYTFPKEQYV
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggacagcactggattttggatattcctgataacaacttgtgttattccaggaatgaat
ggccagagtgtgcaaatggatgatgggaggtgggggtatattggctcaaaggtggatctc
cgctgtcggttcatcaacagctccccgcccgtcaagatatcacaggtaacgtggcagaag
ctggtgaatggcacgaagcagaacgtggccatcgccaacccctcgctgggcgtgtccgtg
gccccgcccttcagggaccgagtcacattcaagaatggagcagtgaggaggcggactccg
tctctggaagacaccaccatcaccttctccacgctccgcctctccgacgagtcctcctac
atctgtgaatacaccacgttccctgcaggaaacagagaaaacacagtaaacctcactgtg
tacgttcgcccaactactcagattagtctgtcaacgccgacgctggtggctcgttcctcc
aatctaaaaacaccagtggccacctgcacctgtgccaacggaaaaccagccggtaccatc
agatgggagactagggtgccgggggaagcgaccaaccgggagtacaggaactccgacggg
acgtttactgttcagagtgaatatgttttggtgcccagcaaagacacacacaaggagatg
ctcacctgcgtcacctcctacaacgatgaggtcttcactgacagtgtcaccctcgatatt
cagtatgagccagatgttgtggtggatgggtacgatggaaactggtacctgaaccgagag
aacgtccagctgagctgccaagccgatgccaacccgaccgtctctctgtatcagtggaga
ctggttaatggctccataccgagcaatgctgagatccgagacaacgtcctgaccctgaag
gggccgatcacatacgacctgcagggcacctacgtgtgtgacgcaaccaacagcatcggg
acccgatcaggctctgtggaagtcagcattatagaaaagcctttaccgcagatagcaacg
ggtgatgtcatcagcgtagtcgccttattgctggctgctggagtgcttatgggcattact
atcacagtgctggtgctcaaaatcagaagtaaaaaaggcagctcctcaaatgactctccg
tccacaaaactttcccagacgataaggaaaagaccagcagacgacatccagcacgcaggg
cggttctacgaagagcttcccaacacagcagactatgtgagctacagactggcctgcaac
aaggaggattacccagagccctactcccctcccatcaaccctcctctctcatttctcccc
cagcacccttacccttcctcacaaccaacccctgccaccagcagcagcggcaacagcacg
ccaaaaaataccttctctccaccttcacacaccatggccatctttaaatacccatctgta
ccgggcatgtcttctcctcctccgggagtggcggcgtacacttttcccaaagagcagtac
gtctga
DBGET
integrated database retrieval system
