Pseudochaenichthys georgianus (South Georgia icefish): 117458406
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Entry
117458406 CDS
T09629
Symbol
supt6h
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117458406 (supt6h)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117458406 (supt6h)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
117458406 (supt6h)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
117458406 (supt6h)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
S1
Spt6_S1
S1_RRP5
HHH_3
HHH_9
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
117458406
NCBI-ProteinID:
XP_033954744
LinkDB
All DBs
Position
14:15959036..15976395
Genome browser
AA seq
1774 aa
AA seq
DB search
MSDFIVSEAEESEEEEEELEEKDLKPKKTQRFVEEDDEEEEENTEDQDERGNLRGLIDDA
EEEEEAPAPAPASAAGSDSEEEVKHRRKKRNRSDDYLDDDDLDLIEENLGVKVKRRKKKY
DRVKTLDDDEEDDDEKDLIADEIFHGDAEGDLEEGEAVDEPLHQAEEEEEGEDEESDIDD
FIVDDDGQPITKKRGKKFSGYTDAALQEAQEIFGGDFDFAEFDADAYDQGEEEEEDQDEE
AWDRPKKQTKRRQGRKSIFEIYEPSELESSHMTDQDNEIRNTDMPERFQLRSIPVKPAED
DELEEEAEWIFRHGFSTLTISMQESTDYLDRGTTTNFSRKGPSTIAKIKEALNFMRNQQF
EVPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKNRKQNLTRLFQKMQAFQFEQISAD
PDKPLADGVRPLDISDLERLKDVQTLEELGDVYNHFLLYYGRDIPKMQNTVKTSKKRLKK
IKEVNEDGEEEELEVEEEEEEQKGPDLKLASRRDMYSICQSVGLDGLAKKFGLTPEQFGE
NLRDSYQRHETEQFPAEPVELAKDYVCSQFSSPEAVLEGTRYMVAMQIAREPLVRHVLRQ
TFQERAKINIKPTKKGKKEIDEAHFAYSFKYLKNKAVKELNGDQFLKMGLAEEEGLLTIN
ICIDLLGVKGFAGEQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERALTQFLYPQMAKE
LKSKLITEAKESIVRSCCRRLYNWLKVAPYRPDQQVEEDDDLMDESQGKGIRVLGVAYAP
SRDTPVFCALINGEGEVADFLRLPYFMKRRNAFREDEREKKAHDIETLKKFLSGKKPHVV
AVAGENRDAQMIMEDIKRAISELEQESSVPAVGVELVDNELATLYMNSKKSEVDFRDYPP
LLRQAVSIARKIQDPLIEYAQVCSTDDDILCLKLHPLQEQVVKEDLLCALYFEFINRVNE
VGVDVNKCIAHPHTQSLVQFVCGLGPRKGSQLLKILKQNNTRLENRTQLVTMSHMGPKVF
INCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGA
LEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVAYRVPNTEE
VFNLLTKDTPETFYIGKLITSIVTGIAHRRPQGESYDQAIRNDSTGLWQCPFCQQDNFPE
LSEVWNHFDSGSCPGQAIGVRSRLDNGVQGFIPTKFLSDKTVKHPEERVKVGMTVHCRIM
KIDIEKFSVDLTCRTSDLMDKANEWKLPKDSYYDFDKETEDQKQEEDLKKKQQRTPYIKR
VIAHPNFHNISFNQAEKMMETLDQGDLIIRPSSKGENHLTVTWKVADGIYQHVDVREEGK
ENAFSLGHTLWINSEEFEDLDEISARYIQPMASFARDLLGHKYFQELGSKDKMEELLVKT
KREKPTFIPYFLSVCKELPGKFILGYQPRGKPRVEYVTITPDGFRYRSQVFPTVNGLFRW
FKDHYQEPVPGVTPSNSSRTRTPASLNATPANINIADLTRAVNSLPRNMTSQMFNAIAAV
TGQNQNPNTTPAQWGSSQYGYGGSTGGGGGSSSAYHVFATPQQPIATPLMTPSYSYTTPS
QQALGTPQYANTTPQSSHSHGSLPLGSHVSQPSHHSSQHSNPSGTPTSSTSSRGRTPQQQ
QPPPPKPSGSNAXAVDWGKMAEQWLKEKEAEGRKKTPRMTPRPSPSPMIESTPMSIAGDA
TPLLDRNGTDRTRRGASLPPPLPNSILCTASSSG
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactttattgtcagcgaggctgaggagtcggaggaggaggaggaggagttagaa
gagaaagacttaaaacctaaaaagacccagcggtttgtggaggaagatgacgaggaagaa
gaagagaacacagaggaccaggatgaacgaggaaatttacgcggactcattgatgatgca
gaagaggaggaggaggcgccggcaccagcacctgcaagtgcagcggggagtgactcagaa
gaagaagtgaagcatcgacggaaaaagcgcaatcgtagtgacgactacctggatgacgat
gatttggacctgattgaggaaaacttgggtgttaaagtgaaaagaaggaagaagaaatac
gaccgtgtaaaaacactcgatgatgatgaagaagatgacgacgagaaggacttgatcgca
gatgagatctttcatggagatgcagagggcgatctggaggaaggggaggctgtcgatgag
cccctccaccaagcagaggaagaggaagaaggagaagacgaggagtcggatatagacgat
tttattgtggatgatgacggccaacccatcaccaaaaagaggggcaagaagttctccgga
tacacagatgcagccctccaggaggcccaggaaatcttcggcggagactttgactttgct
gaatttgacgcagacgcatacgaccagggtgaggaggaggaggaggaccaggatgaagaa
gcttgggaccgacccaagaagcagacaaagaggaggcaaggcaggaagagcatctttgag
atctacgagcccagcgagctggaaagtagtcacatgaccgaccaagacaacgagatccgt
aacacagacatgccggagaggttccagttgcgatccatccctgttaaacccgctgaggat
gatgagctggaagaggaagcagagtggatcttcagacacggattctccactctaactatc
tccatgcaggagagcacagattatctggacagggggacgactacaaacttcagcaggaag
ggccccagcacaattgccaagatcaaagaggccctcaacttcatgaggaatcaacaattt
gaggtcccattcatagctttctacaggaaagaatatgtggagccagaactaaacataaac
gacctgtggaaggtttggcagtgggatgaaaagtggactcagctgaagaaccggaagcag
aacttgacccgtctgttccagaagatgcaggccttccagtttgagcagatctcagctgac
cctgacaaacctttggctgacggcgtccgtcctttggacatctccgacctggagagattg
aaagatgtgcagactcttgaagagctgggggatgtttacaaccacttcctgctctactac
ggccgagacatccccaagatgcagaacactgtaaagaccagtaagaagaggctcaagaag
atcaaagaagtgaacgaggatggtgaagaagaggaattggaggtagaagaagaagaagaa
gaacagaaaggacctgacctcaagctggcgtctcgtagagatatgtacagcatctgtcag
agcgtaggactggatggcttggctaaaaagtttgggttaactccagagcagtttggagag
aatttgcgtgacagttaccagcgtcacgagacagagcagttcccggccgagcccgtggag
ctggctaaagactacgtgtgcagtcagttcagctctcctgaggccgtgctggaaggaacc
aggtacatggtggccatgcagatcgcccgtgaacctctggtcagacatgtcctccgacag
acctttcaagagagggccaagatcaacatcaagcccacaaagaaggggaaaaaggagata
gacgaggctcattttgcctactccttcaagtatcttaagaacaaggctgtgaaagagctg
aatggggatcagttcttgaagatgggcctggcagaggaagaggggctgcttaccattaat
atctgcattgaccttttaggagtcaaaggcttcgccggggaacagacttactttgacgag
atcaaacagttctactacagagatgagttcagtcaccaggtgcaggagtggaacaggcag
cgaactcttgccatagagagagccctcactcagttcctctaccctcagatggccaaggag
ctcaagagcaaactgatcactgaggccaaggagagcattgtccggtcctgctgccgtcgg
ttgtacaactggctgaaagtggctccttaccgaccagatcagcaggttgaggaagacgat
gatctgatggatgagagtcagggcaaaggcattcgggtgctgggagtagcatatgcgccc
agcagagacacacccgtgttctgtgctctgatcaacggggaaggggaggtggccgacttc
ctgcgtctgccctacttcatgaagaggaggaacgcctttagggaggatgagagagagaag
aaggcccacgacatcgaaactctcaaaaagtttctatctgggaagaaacctcatgttgtg
gctgtcgctggggaaaacagagatgctcaaatgatcatggaggacatcaagagggccatc
agcgagctggaacaagagtcctctgtccccgctgtgggagtggagcttgttgacaatgag
ttggccacgctgtacatgaacagcaagaagtctgaggttgactttagggattaccccccc
ttgctgcgacaggctgtgtcgatagccaggaagatccaggaccccctgatagagtacgct
caggtttgcagcactgatgatgatattctctgcctcaaactccacccgctgcaggaacaa
gtggtgaaggaagatttgctctgtgctctttactttgaattcattaaccgtgtgaatgag
gtcggagtggatgtgaacaagtgcatcgcccaccctcacacccagagcctggtgcagttt
gtctgtggtctggggccgaggaagggctcccagctgctgaagattctgaagcagaacaac
actcgtctggaaaaccgaacccagctggtcacaatgagtcacatgggacccaaggtgttc
atcaactgtgctggtttcatcaagatcgacacggcgtcgctcggagacagtacggactcc
tacatcgaggtcctggatgggtctcgtgttcaccctgagacgtacgagtgggctcgtaag
atggccgtggacgctctcgagtacgatgaatcggcagaagatgccaacccagccggagct
ctggaggagatcttggaaaacccagagcgtctcaaagatctggacctggacgccttcgct
gaagagcttgagagacagggttatggcaacaagggcattactctgtatgatatccgtgca
gagctgagctgcaggtacaaagatctgagagtcgcctacagggtccccaacactgaggag
gtcttcaacctgctcaccaaggacaccccagagaccttttatattggtaagctgatcacc
agtatagtaactggtatcgctcaccggcggcctcagggagagagctacgaccaggccatc
agaaacgactccaccgggctgtggcagtgtcctttctgccagcaggacaacttccccgaa
ctcagcgaggtttggaatcactttgacagcggttcgtgtccaggtcaggccatcggggtg
cggtccagattagataatggcgtccaggggttcattcccaccaagttcctcagtgacaaa
acggtcaaacaccccgaggagagggtcaaggtgggtatgacggttcactgccgcatcatg
aaaatcgacattgagaaattcagcgtggacctcacatgccgcacctccgatctgatggac
aaggccaatgagtggaagcttcccaaggacagctactatgactttgacaaagagactgaa
gaccaaaaacaggaagaggacctcaaaaagaaacaacagcgaacaccatatataaagcgt
gtgatcgcccatcccaacttccacaatatcagtttcaaccaggcggagaaaatgatggag
accctggaccaaggagacctgatcatcagacccagcagcaagggggagaaccacctcacg
gtcacctggaaggtggctgatggcatctaccagcatgtggatgtgagggaagaaggcaaa
gagaacgcattcagcttaggacacactctctggatcaactctgaggagtttgaagatctg
gatgaaatcagtgctcggtacattcaaccaatggcgtcatttgcccgagatctcctgggg
cataagtactttcaggaattggggagcaaggataaaatggaggagttgttggtcaagaca
aagagggagaagcctacttttattccatactttctatcggtatgtaaagagctcccgggg
aaattcatcctcggctaccagcctcgaggaaaaccaagggttgagtatgtgaccatcacc
ccggatggcttccggtaccgctcacaggttttccccacagtgaacgggttattccgctgg
tttaaggaccattaccaagagcctgtgccaggcgtcactcccagcaacagcagtcgaaca
aggactcctgcgtccctgaacgccaccccagcaaatatcaacatcgcagacttgacgcga
gctgtcaactccctcccacgcaacatgacctctcagatgttcaatgccatcgccgcggtt
acaggccagaaccagaaccccaacaccacccccgctcagtggggctccagccagtacgga
tacggtggcagcacagggggaggaggggggagctcctctgcgtaccatgtgtttgctacc
cctcagcagcccatagcgacgcccctgatgacgcccagctactcgtacaccacccccagc
cagcaggctctgggcacaccgcagtacgccaacaccaccccccagtcctcacactcccac
gggagccttccactcgggagccacgtgtcacaaccaagccaccacagcagtcaacacagc
aacccgtccggcacacccacatcctccacctcatccagaggacgcacgccacagcagcag
cagccgccgccaccaaagcccagcggcagcaacgccntcgcagtggactggggcaagatg
gcggagcagtggctgaaggagaaagaggcggagggtcggaagaagaccccgaggatgacg
ccccgcccgtcccccagccccatgatcgagagcacgcccatgtccatcgccggagacgcc
acacccctgctggaccgaaatgggaccgataggacacggaggggggcgtcgctaccccca
cccctgcccaactccatcctttgtactgcttcttcatctggataa
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integrated database retrieval system
