Pseudochaenichthys georgianus (South Georgia icefish): 117458448
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Entry
117458448 CDS
T09629
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117458448 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117458448 (lig3)
Enzymes [BR:
pgeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117458448 (lig3)
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
117458448 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
mRNA_cap_enzyme
RNA_ligase
RhlB
Motif
Other DBs
NCBI-GeneID:
117458448
NCBI-ProteinID:
XP_033954817
LinkDB
All DBs
Position
14:complement(4910537..4937225)
Genome browser
AA seq
1036 aa
AA seq
DB search
MQRPLVLLSKKTVSAGFQPLGTLVRCQPLWKGSRNRSVPSCFKQIPPTVHAFNISRQNHN
FSLVSRILRKDSSRLSLQPFFSEMADQKFIVEYAKRGTAGCKKCKEKIMKGIVRIGKVVP
NPFSESAGEMKEWYHSKCIFEKMEKARATTKKIEDITDLEGWEELQDEDKEAINKHVSDL
TAKVNSTPKKKVQAKLNASGQTMAPPADPTLNAPRKFSGFTATKAGSSSSPGPSSSSSSP
SSSSPSQGSALSSQLCDRNHKDCLLREFRKLCATVAEHNSYNTKTQIIEKFLRKGSAGDK
FHGDVFLTVKLLLPGVVKSVYNLNDKQIAKLFSRIFKCNQDDMVRDLEQGDVSETVRMFF
EESKSFPAASKSLLTIQEVDASLTRLALLTKEDEQQVELEEISKKCTGNDLKCIIRLIKH
DLKMNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDATNGSGPRKLLTVEASLM
TPVQPMLAEACKSIEHAMKKCPNGMYSEIKYDGERVQVHKNGDIFSYFSRSLKPVLPHKV
AHFKEFIPQAFVGGDSMILDAEVLLIDTNTSKPLPFGSLGVHKKAAFQDAKVCLFVFDCI
FFNGVSLMERPLSERRKFLRDNMVEVPNRILFSEMKHVTRAGDLADMITRVIREGLEGLV
LKDLKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLLGCYDP
HSKKWCTVTKCSGGFDDAMLARLQKELDMIKISKEPSKIPGWIKVIKNYYPDFIIRDPQK
APVWEITGAEFSKSEMHTADGISIRFPRMTRVRDDKDWKTATNLERLRELFRISKENCDF
KVTAGPSANDGKGSSGDSGGSSPSSSSHGAPPPKKTNPRTPKPKVIKSEPRTPGYDAPSA
KKVKVEKEVKMEKVEKEVKMEKEVKMEKMEKAVKTESVHSNGKTQNKPTAQILKPRNDKT
LLDIFSGVKLFLPSSVQDFDKLRRYFVAYDGDLVADFEVSMATHTLGAPGDDSSAHKVTP
SWIWECIRKRRVVPAC
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaccgctcgttttattatctaaaaagactgtctctgccggctttcagcctctt
ggcacacttgtcaggtgtcagccactctggaaagggtctagaaaccgctctgtcccttca
tgctttaaacaaatacccccaactgttcatgcatttaacatttcccggcaaaaccacaac
ttttccttagtatccagaatcctgcggaaagattcttcccgtctttctttgcaaccattt
ttctccgagatggcagaccagaagttcatcgtggagtacgccaaacgtggcactgcagga
tgtaagaagtgcaaggagaagattatgaaggggatagtgcgcatcgggaaggtcgttcca
aaccccttcagcgagtctgcaggagaaatgaaggagtggtatcactccaagtgtatcttt
gagaagatggagaaagccagagccaccaccaagaagatcgaggacatcacagacctggag
ggctgggaggagctgcaggacgaggacaaggaggccatcaacaaacatgtctcagacctg
acggccaaagtcaactcgaccccgaagaagaaggttcaggcgaagctgaacgcgtcgggt
cagacgatggcgcctcctgccgaccccacgctcaacgctccacgcaagttctcaggcttc
accgctacgaaggccggcagctccagcagcccgggtccttcctcctcttcctcttctccc
tcctcttcctcgcccagccaaggcagcgctctgtcctctcagctgtgcgaccgcaaccac
aaggactgtctgctcagagagttcaggaagctctgtgccacggttgccgaacacaacagc
tacaacaccaagacgcagatcatcgagaagttcctcaggaagggctccgccggagataag
ttccacggagatgttttcctgacggtgaagctgctcctgccgggcgtcgtgaaaagtgtc
tacaacctgaacgacaagcagatcgctaaactcttcagccgcatattcaaatgcaaccag
gacgacatggtgcgcgacctggagcagggcgatgtgtctgagacggtgcggatgttcttc
gaggagagtaaatcgtttcctgcggcgtccaaaagcctcctcaccatacaggaagtggac
gcctcgctgacccgcctggcgctgctgaccaaggaggacgagcagcaggttgagctggag
gaaatctccaaaaaatgcaccggtaacgacctgaaatgcatcattcgtcttataaagcac
gacctcaagatgaattctggagcaaaacatgtcctggacgctgtggatccaaacgcttac
gatgccttcaaggcctctcgtaatctgggagacgtgatcgagcgggtgttgaggaaccaa
caggacgcgactaacggctccggaccccgaaaactcctcactgtggaggcgtctctcatg
acccccgtgcagcccatgctggcagaggcatgtaaatccatcgagcacgccatgaagaaa
tgtcccaatgggatgtactcggagatcaaatacgacggagaacgtgtgcaggtccacaag
aacggagacatcttcagctacttcagccgcagcctgaagccagtgctgccacacaaagtg
gcacatttcaaggagttcatcccccaggcgttcgtgggaggcgacagcatgatcttagac
gctgaggtgcttctgatcgacaccaacaccagcaagcctctgccctttgggagcctggga
gttcacaagaaagcggccttccaagatgccaaagtgtgcctttttgtctttgactgcatc
ttcttcaacggcgtgagtctcatggagaggcctctgagtgagcgcaggaagttcctgcga
gacaacatggtggaggttcccaacaggatcctgttctcagagatgaagcacgtcactagg
gcgggagatctggcagacatgatcactcgagtcatcagagagggactggaaggcctcgtg
ctcaaagacctgaagggtacgtatgagccggggaagcgtcactggctgaaggtgaagaag
gattatctgaatgaaggagcgatggctgacaccgcggacctggtggtgctgggagctttc
tacgggaagggatcaaacgggggcatcatgtccagtttcctgctgggatgttacgaccct
cactctaagaagtggtgcaccgtcactaagtgctccggcggcttcgacgacgccatgttg
gctcgactccagaaggagctggacatgatcaaaatcagcaaggaacccagcaaaatcccc
ggctggataaaagtcatcaagaactattatccagatttcattatccgggatcctcagaaa
gctccggtctgggagatcaccggcgcagagttttccaaatcagaaatgcacacggctgac
ggcatctccatccgattcccccgcatgacgcgcgtccgagacgacaaggactggaagacc
gccaccaacttagagcggctcagggagctgttccgcatctcgaaggagaattgtgacttt
aaggtgacggctggaccctcggctaacgacgggaagggatcctcaggagacagcggagga
agctccccctcctcatcctcacatggagcccctccacccaagaagaccaaccccaggacg
cccaaaccaaaggtgatcaaatctgagcctcgcaccccggggtacgacgctcccagtgcc
aagaaggtgaaggtggagaaggaggtgaagatggagaaggtggagaaggaggtgaagatg
gagaaggaggtgaagatggagaagatggagaaggcggtgaagacggagagcgttcacagt
aacgggaaaacacaaaacaaaccaacggctcaaatcctgaagcccaggaacgataagacg
ctgctggacatcttcagcggcgtgaagctcttcctgccctcctcggtgcaggacttcgac
aaactgaggcggtacttcgtggcgtacgacggagacctggtggccgacttcgaagtctcc
atggcaacgcacacgctgggcgcccccggcgacgacagctcggctcacaaagtgacgccc
agctggatctgggagtgtatccgcaagaggcgtgtcgtccctgcctgttga
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