Pseudochaenichthys georgianus (South Georgia icefish): 117458510
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Entry
117458510 CDS
T09629
Name
(RefSeq) short transient receptor potential channel 4-like
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117458510
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117458510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
Ank_5
PKD_channel
YVC1_C
Motif
Other DBs
NCBI-GeneID:
117458510
NCBI-ProteinID:
XP_033954948
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All DBs
Position
14:complement(17474033..17497883)
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AA seq
947 aa
AA seq
DB search
MSQLYYRRTDSSSYRDRIPLRIVRAESELSPLEKAYLGAVEKGDYASVKQALEEAEIYFK
ININCIDPLGRTALLIAIENENLEIIELLLSFSVYVGDALLHAIRKEVVGAVELLLNHKK
PGGGMQVPPILLDKQFSDFTPDITPIILAAHTNNYEIIKLLVQKGVSMPQPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALSSPSLIALSSEDPFLTAFRLSWELEELSKVENEFKSE
YEELSQQCKQFAKDLLDQTRSSRELEMILNYRDDINLLEDEGNNDLARLKLAIKYHQKEF
VAQPNCQQLLASRWYDEFPGWRRRQWAGKCITCVFIGLLYPVFAVCYLIAPKSRHGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIVTTEQDRQDRQGPAPTTVEWMILPWVLGFIWAE
IKQMWDGGFQDYVHDWWNLMDFVMNSLYLATISLKIVAYTKYSGSKPRNQWEMWHPTLVA
EAVFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQL
YFYYETKASDERGKCKGIRCVEQNNAFSTLFETLQSLFWSIFGLINLYVTNVDADHQFTE
FVGATMFGTYNIISLVVLLNMLIAMMNNSYQHIADHADIEWKFARTKLWMSYFEEGATLP
APFNIIPSPKLFLYFLCWIKRHVCKITGSKRSEIFGSLGRRAAENLRINTQYQEVVRNLV
KRYVAAMIRDAKTEEGLTEENFKELKQDISSFRYEVMGMMKTGKPALQGAKASGSSAESS
LAYPNSSLKVSPAPQSSQGKSKHNRFKIIASILKQSCSSASPRPPEVFNGLPNGLVVSEE
SSSKKSSHKRNPPKDDIDFGLLQTRHWGSSEATSGAGEIPREMYSLSEEAGGPEVSDAEQ
RDREQKDIGERGLPLTEGEEETAVNEAKEENSEVINTNSSSDEGGKI
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagctgtactaccggcggactgacagctcgtcttaccgggaccgcatcccgctg
agaatagtgcgggccgaatcggagttgtcgcctctggagaaagcctacctcggagctgtg
gagaagggggactacgctagtgtcaaacaggctctggaggaggcagagatctacttcaag
atcaacatcaattgcatcgatcctctcggccgaacggctctactgattgccattgagaac
gagaacctggaaatcattgaactcttgctgagcttcagcgtctacgtcggagatgctttg
ctacatgcaatccgcaaggaagtggtgggagctgtggagctgctgcttaatcacaagaag
cccggtggaggcatgcaagtgcctcctatcttattggacaagcagttctctgacttcacc
cctgacatcactcccatcatcctcgctgcacacaccaacaactatgaaattattaagctt
ttggtgcagaaaggcgtgtcaatgccgcagccacatgaggtgcgctgtaactgcgtggag
tgtgtgtctagttcagacgtggacagcctgcggcactcgcgctcccgcctcaacatctac
aaagcgctgtcaagcccctcgctaattgcgctctcgagcgaggaccccttcctcactgcg
ttcaggctcagctgggagctagaggagctcagcaaggtggagaacgagttcaaatcagag
tatgaggagctgtcacagcagtgtaaacagtttgccaaagatctcctggaccagacaaga
agctccagagagctggagatgatcctcaactacagagacgacatcaacttattggaggat
gagggcaacaacgacctggcaagactcaaactagctatcaaataccaccaaaaagagttt
gtagcgcagccaaactgccagcagctcttagcgtcccggtggtacgacgagttccccggc
tggaggcggcgccagtgggcagggaagtgcatcacctgtgtgttcatcggcctcctctac
cctgtgtttgctgtctgctacctcatcgctcccaagagtcgccacggcctcttcatccgc
aagcccttcatcaagttcatctgccacacggcctcctacctgaccttcctgttcctgctg
ctcctcgcctcccagcacatcgtcaccaccgagcaggaccggcaggacaggcagggtccg
gctccgaccaccgtggagtggatgatcctgccctgggtgctgggattcatctgggcagag
atcaaacaaatgtgggatggtggtttccaagactacgtccatgactggtggaacctgatg
gactttgtcatgaactctctgtacctggccaccatttctcttaagattgtagcctacact
aagtacagtgggagtaaacccaggaaccagtgggagatgtggcacccaacactagtggct
gaggcagtgtttgccatagccaacattttcagttccctgcgcctcatctcgctcttcact
gccaactctcacctggggccgctgcagatctctctggggagaatgctgctggacatcctg
aagttcctcttcatctactgtctggtcctactcgcttttgctaacgggctgaaccagctg
tacttttactatgagacaaaggcttcagatgagagggggaaatgcaaaggcatccgctgt
gtggagcagaataacgctttctccacgttatttgagaccctgcagtctctcttctggtcc
atcttcggtctgatcaacctgtatgtgaccaacgtggatgcagaccatcagttcacagag
tttgtcggggccacaatgttcggcacttacaacatcatctcactggtggtgctcctcaac
atgctgatagccatgatgaacaactcctaccagcacattgcagaccatgcggacattgag
tggaagtttgctaggacaaagctgtggatgagttactttgaagaaggggcaacactgccg
gcccctttcaacatcatccccagccccaaattattcttgtactttttatgctggatcaaa
aggcatgtgtgcaagataacaggatccaagcgcagtgaaatctttggaagtctcggaagg
cgagcagcagagaacctgaggataaacactcagtaccaggaggtagtgaggaacttggtg
aaacgttatgtggccgccatgattagagacgccaagacagaagaaggcctgactgaagag
aacttcaaggagctgaaacaagacatctccagttttcgatatgaggtgatgggcatgatg
aagacagggaagcccgctcttcagggggcaaaggccagtggcagctcagcggagtccagc
cttgcttaccccaactcgtcgctcaaggtttctcccgccccccagagcagccaggggaaa
agcaaacacaacagattcaagatcatcgcatccatcctgaagcagagctgttcttcagct
tcaccgagaccgcccgaggtcttcaacgggctgcctaacggactggtggtctccgaggag
agctcaagtaaaaagtcaagccacaagagaaatccccccaaagatgacattgactttggc
ttgttgcagacacgccactggggcagcagcgaagccacatcgggggcaggagagattccc
agagagatgtactctttgtcagaagaagcgggggggccggaggtctcagacgcagagcag
cgagacagagagcaaaaggatataggtgagagaggactcccgctgacagagggggaggag
gaaactgcagtgaacgaggccaaggaggaaaacagtgaggtcatcaacaccaacagcagc
tccgatgaaggtggcaaaatatga
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