Pseudochaenichthys georgianus (South Georgia icefish): 117458892
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Entry
117458892 CDS
T09629
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117458892 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117458892 (ddx46)
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117458892 (ddx46)
Spliceosome [BR:
pgeo03041
]
Complex A
U2 snRNP components
U2 related factors
117458892 (ddx46)
Complex B
117458892 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
117458892
NCBI-ProteinID:
XP_033955501
LinkDB
All DBs
Position
14:11067181..11082211
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AA seq
1063 aa
AA seq
DB search
MGRESRHYRKRSTSRGRSGSRSKSRSPDKRSKKDDRDRNRRERSRSRDRRRSRSRDRKRP
RRSRSRERRRSRSRDRRRSGSRTRARRSRSGSKSRRPDEKPRSKEKDNIDPLSDKKKIKE
EKEDEKIEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQGKKWS
LEDDEDDDEDMSAPMEGDDEEEGEEKGEDKEKEMIKEEKKEEGEAEQETPMEQQEEEEED
DVDTLDAYMEAVKQEVKKFNMGSMKGNDKKGGIMSVTKVMTVVKTKKGPNTHKKKGELME
NDQDAMEYSSEEEEVDLQTALTGFQTKTRKVLEPVDHGKIEYEPYRKNFYVEVPELARMT
PEDVHLYRLELEGITFKGKGCPKPIKTWVQCGVSMKILGSMKKQGYDKPTPIQAQAIPAI
MTGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPIAVIMTPTRELALQIAKECK
KFSKQLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRSTYV
VLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRAMEALARRILIKPLEVQVGGR
SVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADSLLKDLMKASYPC
MSLHGGIDQYDRDSVISDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHR
AGRTGRAGNKGFAYTFITDDQVRYAGDIIKALELSGSPVPPELEQLWSSFRDQQKAEGKT
IKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKKR
VKDLSAPGATSGSAGSTSSTSSASGGLPGLGPTSAGNIQKLEMAKRLALKINAQKNLGAE
AQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAET
VKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYL
AIESANEMAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtcgagacactacaggaagcgctctacgtctcggggccggtcaggcagc
cgatcaaagagtcgctccccggacaaacgctccaagaaggacgaccgggaccggaacagg
agggagaggtcccggagccgagaccgccggaggtcccggtccagagacagaaaacgaccc
aggcgctccaggagcagagagaggaggaggtccaggagcagagacaggaggaggtcgggc
agcaggacccgggcccggaggtcccgatctggaagcaagagcaggaggcctgatgaaaag
ccaaggagcaaggagaaagacaacattgatcctttgtctgacaagaaaaagataaaagag
gagaaagaggatgagaagattgaggatcaagactttgaccagaacaagcttgaggaggag
atgaggaagaggaaggagcgtgtggagaagtggagggaagagcagaggaagaaggccata
gagaacatcggggagatcaagaaagaactggaggagatgaagcagggcaagaagtggagc
ttggaggatgatgaagatgatgacgaggatatgtcggctccaatggagggggacgatgag
gaagaaggggaagagaagggggaggacaaagagaaggagatgataaaggaggagaaaaaa
gaggagggtgaggcggagcaggagacccctatggagcagcaggaggaggaggaggaggac
gacgtggacactctggacgcctacatggaggcggtgaaacaggaagtgaagaagttcaac
atgggatccatgaaaggaaatgataagaaaggaggaataatgtcagtaaccaaagtgatg
actgttgttaaaaccaagaagggacccaacactcacaagaagaagggtgagctgatggag
aacgaccaggatgctatggaatactcgtcagaggaggaggaggtggatctgcagacggct
ctgacgggcttccagaccaaaacgaggaaggttctagagcctgtcgatcacgggaagatt
gagtacgagccataccgcaaaaacttctatgtggaggttcctgagctcgccaggatgact
ccagaagacgtgcacttgtacaggttggaactggaaggcattacatttaaagggaagggc
tgtcccaaacctatcaagacctgggtgcagtgtggagtgtcaatgaagatcctcggttct
atgaagaaacagggctacgataagcccactcccatccaggcccaggccatccctgccatc
atgacgggccgcgacctcattggcatcgctaagaccggcagcgggaaaaccatcgccttc
ctgctgcccatgttccgacacatcatggaccagaggcccctggaggagtctgagggacca
atagctgtcatcatgactccgaccagagagttggctcttcagatcgccaaggagtgtaag
aagttctccaaacagctgggactccgggtggtgtgtgtttatggaggcacaggcatcagt
gaacagattgctgagctgaagagaggagcggagatcatcgtgtgcacaccgggaagaatg
attgacatgttgggggccaacagcggtcgagtcaccaacctgcgcagatctacatatgtg
gtgttggatgaagcagacaggatgtttgacatgggctttgagccacaggtgatgcgtatt
atagacaacgtgcgtccagaccgtcagacggtcatgttctccgccaccttccccagagct
atggaggcgctggcccgtaggatcctgatcaaacccctggaggtccaggtggggggccgc
agtgtggtctgctctgatgtggaacaacacgtgctggtgattgaggaggacaagaagttc
ctgaagcttcttgagattctgggtcactaccaggagaagggctcggtcatcatctttgtt
gacaaacaggagcatgcagactctctgctgaaagacctgatgaaagcctcgtacccctgc
atgtcactgcacggaggaattgaccagtacgacagagacagcgtcatcagcgactttaag
aacggagcatgtcgtctgatggtggccacctctgtggctgcgcgaggcctggacgtcaag
cagctgatcctggtggtcaactacaactgtcccaaccactacgaggactacgtccacagg
gccggacgcacaggccgcgcaggcaacaagggcttcgcctacaccttcatcacagatgac
caggttcgctatgcgggggatatcatcaaagccttggagctgtccggttctcctgtcccg
cctgaactggagcagctttggtcctccttcagagaccaacagaaagcggagggtaagacc
attaagagcagcagcggcttctcagggaaaggcttcaagtttgatgaaacggaacacgcc
ttggctaatgagagaaagaagcttcagaaagctgctctcggactgcaggactctgatgac
gaggatggagccctggatattgaagagcagatcgagagcatgttcaactccaagaagcgg
gtgaaggacctgtcggctcccggggcgacctccggctctgcaggatcaacgtcctccaca
tcgtccgcctccggggggctgccgggcctcggcccgacgtctgctggaaacatccagaaa
ctggagatggccaagaggctggcgctgaagatcaatgctcagaagaacctgggcgccgag
gctcaggacgtgatgcagcaggccaccaacgccattctgcgggggggcaccatcatgacg
ccctcggtgtcggcaaagaccatcgcagagcagctggcggagaagatcaatgccaagctg
aactacacccccgtggagaagctggaggaggagcgacaggcggctgaacaggccgagacc
gtcaagagatacgaagaggagctggagatcaatgacttccctcagacggccaggtggaag
gtgacgtctaaggaagctctgcagaggatcggtgaatactctgaggccgccatcaccatc
agaggaacatatttccctccaggcaaagagcccaaggagggagaacgcaagatctacctg
gctattgaaagtgcaaatgaaatggccgtgcagaaagccaaaacagagatcacgcggttg
atcaaggaggagctcatcagattacaaaattcttaccagccgacgagcaaaggccgttac
aaagtgttgtag
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