Pseudochaenichthys georgianus (South Georgia icefish): 117459648
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Entry
117459648 CDS
T09629
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117459648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pgeo04121
]
117459648
Enzymes [BR:
pgeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117459648
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117459648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
PRY
FN3_DSCAM-DSCAML_C
zf-RING_2
TRIM_CC
zf-C3HC4_3
Pur_ac_phosph_N
zf-C3HC4_2
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
117459648
NCBI-ProteinID:
XP_033956570
LinkDB
All DBs
Position
2:8335695..8387962
Genome browser
AA seq
689 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILISHCTTNESVLSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGIPLPLALPAPHSGPNSPGEEGRDRL
ALVPFSAAMSSPGTPPEPIQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTG
HRLIEPMPDSHLRGLQCLEHEEEKVNMYCVTDDQLICSLCKLVGRHRDHQVAALSDRYEK
LKQALDSNLSNLIKRNNELESIMGKLIQTCQHVEVNASRQEGKLLEECDVLIEIIQQRRQ
IIGSKIKEGKTQRIRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKCINER
VSMASASTQVLIPEINLTDTFDTVALDFTREKKLLENLDYLTAPNAPCIREELCTASYDT
ISVHWTSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTK
YIFVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHS
QERFTSQNSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLC
RCNNSWVVRHNSKELAIEPSPHLRRVGILLDYDVGSVSFYDAVGSQHLHTFHVSFVQPVC
PVFNVWNKCLTILSGLPIPDHLEGLELDN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacacactggagtcagagctgacttgcccaatctgcctggagctctttgaagaccca
ctgctgctgccctgcgctcacagcctgtgtttcggctgcgcccatcgcatcctcatctct
cactgtaccaccaacgaatcggttctgagcatcggcgccttccagtgccccacctgtaga
tatgtcatctccttgagtcctgagcgtggactagaaggactaaagagaaacgtgaccttg
cagaacattattgatagagtacagagggcctcatcctcggctgggatccctcttccgctg
gcgttgccggcgccccacagcgggcccaactctcccggagaggaagggagagaccggttg
gcgttggtcccgttcagtgccgccatgtccagcccgggcacgcctcctgagcccatccag
tgccagttctgtgagcaggacccgccccaggatgccgtgaaaacgtgtgtgacgtgcgag
gtgtcgtactgcgaggagtgcctccgagcaacgcacccgaacaagaagccgttcaccggc
caccggctcatcgagcccatgccagactcccacctcagggggctgcagtgcctggagcac
gaggaggagaaggtgaacatgtactgtgtcacggacgatcagctgatctgctcgctgtgc
aaactggtgggaaggcaccgagaccaccaggtggcagcgctgagcgaccgctatgaaaaa
ctcaagcaagccctggactccaacctgagcaatttgatcaagaggaacaatgagctggag
tctatcatggggaaactgatccagacttgtcaacatgtcgaggtgaatgcgtcccgtcag
gagggcaagctcctggaggagtgtgatgtcctgatcgaaattatccagcagaggaggcag
atcatcgggagcaagatcaaggaggggaagacacaaaggattcggaagctcgcccaacag
atctccaactgcaagcagtgcatcgagaggtcctcggccctcatcacgcaggccgatcag
acgctgaaagaaacggatcacgctcgcttcctgcagaccgccaagtgcatcaacgagagg
gtttccatggcgtcagcatcaactcaagtgctgatccctgagataaacctaacggacacc
ttcgacacggtcgccctggacttcaccagagagaagaagctgctggaaaatctggattac
cttactgctccgaatgctccgtgcatacgggaagagttgtgcacggcgtcctacgacacc
atctctgtccactggacgtctgatgacgagttcacggtggtatcctatgagctgcagtat
gctatctttactggacagtctaacattgccagtctgtgtaactctttggagagctggatg
attgttcccaacatcaagcagaaccactacacggtgcacggtctgcagagcggcaccaag
tatatcttcgttgtcaaggccattaaccaagcaggaagcaggagcagcgagccggggact
ctgaagaccaacagccagcccttcaagctggaccccaagtcggcccacaagaagctgaag
gtgtcccacgacaacctgacggtggagcgcgacgaaaccacgtccaagaagggccacagc
caggagcgcttcaccagccagaacagctacggcgtggtgggtaacgtctacatcgacagc
ggccgccactactgggaggctttgatcggagggagcacatggtacgctgtgggtattgcc
tacaaatcagctccaaagcacgagtggatcggcaagaactcggcctcctgggtgctctgc
cgctgcaacaactcctgggtggttcgccacaacagcaaggagctggccatcgagccctcg
ccccacctgcggcgcgtcgggatcctgttggactacgacgtcggctccgtgagcttctac
gacgccgtgggctcccagcacctgcacacattccacgtgtccttcgtgcagcccgtgtgc
cccgtgttcaacgtgtggaataagtgtctgacgattctgtccggcctacccatcccggac
cacctcgaggggctggagctcgacaactga
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