Pseudochaenichthys georgianus (South Georgia icefish): 117459872
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Entry
117459872 CDS
T09629
Symbol
capn1a
Name
(RefSeq) calpain 1, (mu/I) large subunit a
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04141
Protein processing in endoplasmic reticulum
pgeo04210
Apoptosis
pgeo04217
Necroptosis
pgeo04218
Cellular senescence
pgeo04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117459872 (capn1a)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117459872 (capn1a)
04217 Necroptosis
117459872 (capn1a)
04218 Cellular senescence
117459872 (capn1a)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117459872 (capn1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pgeo01002
]
117459872 (capn1a)
Enzymes [BR:
pgeo01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
117459872 (capn1a)
Peptidases and inhibitors [BR:
pgeo01002
]
Cysteine peptidases
Family C2: calpain family
117459872 (capn1a)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
117459872
NCBI-ProteinID:
XP_071061838
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All DBs
Position
15:18830121..18841709
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AA seq
703 aa
AA seq
DB search
MYATGMSAVIQANRLRAEGMGTNEHALPFSNQDYEALKQQCVESGCLFEDDCFPAEPPSL
GFKELAPYSSKTRDVEWIRPTDLSDDPQFIVGGASRTDICQGALGDCWLLAAIASLTLNE
TLLHRVVPHGQSFQDDYAGIFHFQFWQFGEWVDVVIDDRLPVKDGELMFVHSAEGNEFWS
ALLEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEMYELRKAPRDLHRIIAKALERGSLL
GCSIDITSAFDMEAVTFKKLVKGHAYSLTGLKEVDYKGNMERLIRIRNPWGQVEWTGAWS
DNSPEWDEVDPSEREDLHLKMEDGEFWMSFNEFKRQFSRLEICNLTADALSEDGLSHWNT
TKFYGAWRRGSTAGGCRNSPNTFWINPQYKITLLEEDDDPEDDEVACSFLVALMQKDRRK
YRRQGQDTHTIGFALYEIPEEYRGCTNVHLKKDFFLTHSSCARSETFINLREVSTRLRLP
PGEYLIVPSTFEASQEADFVLRVFTEKQSETEELDDEISADFGEEEEVTEDDIDDSFKSM
FAQLAGEDMEISVHELRTILNRVVTRHKDLKTDGFSMESCRSMVNLMDKDGSARLGLVEF
QILWNKIRKWLVIFRDFDLDKSGAMSSYEIRLAVEGAGFKLNNKLNQILVARYAENEMVD
FDNFICCLVKLEAMFRSFQHFDKDGSGQAEMNITEWLYLTMCG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcaactgggatgtccgctgtcatacaggccaacaggctgcgagcagaaggcatg
ggcaccaatgagcacgctctgcccttctccaaccaggactacgaggctctgaagcagcag
tgtgtggagtccggctgcctgtttgaggacgactgtttccccgctgagcctccatccctg
ggcttcaaggagctcgccccctattcctccaaaaccagggatgtggagtggatacggccc
acagacctgagtgatgaccctcagttcattgtgggtggtgcctccaggaccgacatctgt
cagggagcgctgggtgattgctggctcttagcagccatcgcgtctctcaccctgaatgag
acgcttcttcaccgggtcgtcccacatggacagtcctttcaagacgactacgctggaata
ttccactttcagttctggcagtttggcgagtgggtagatgttgtgattgatgacagatta
cctgtcaaagatggagagctgatgttcgtccattctgctgagggcaatgaattctggagt
gcactcctagagaaggcttacgcaaagctgaatggatcctacgaggctctgtctggagga
agcaccactgaggggtttgaggacttcaccggtggtgtgtctgagatgtacgagctgcgc
aaggcccccagagatctgcacaggatcatcgctaaggccctggagagaggctctctgctg
ggctgctccatcgatatcaccagtgccttcgacatggaggctgttacattcaagaagctt
gtgaagggccatgcctactcactcaccggactgaaggaggttgattacaaaggcaacatg
gagcgcctaatccggatacgtaacccttggggacaggtggagtggactggtgcctggagt
gacaattcccctgaatgggatgaggttgatccttctgaacgagaggacctgcatcttaag
atggaagatggggagttttggatgtccttcaatgagttcaagaggcagttttctcggcta
gagatctgtaatttgactgctgacgctctgagtgaggatggtctcagccactggaacacc
acaaagttttacggcgcgtggaggagaggcagcaccgccggaggctgcaggaacagtccc
aacacgttctggatcaaccctcagtacaagatcaccttgctggaggaggatgatgaccca
gaggacgatgaggtggcgtgcagctttttggttgctctcatgcagaaggaccgccgcaaa
taccgccgccagggtcaggacacgcacaccattggctttgctctttatgagattccagaa
gagtacagaggctgcacgaatgtccacctgaagaaggatttcttcctgactcattcatcg
tgtgcacgctccgagacattcattaacctgcgagaggtgagcacacggctgcgtctgccc
ccaggggaatacctcatcgtcccctccacctttgaggctagtcaggaggcggactttgtc
ctcagagtcttcactgagaagcaatcggaaacagaagaactggatgatgaaatctctgca
gattttggagaggaagaagaagtaactgaagacgacattgatgactcttttaagtccatg
ttcgcacagctggcaggagaggacatggagatttctgtccacgagcttcggaccattctc
aacagagtcgttacccggcacaaagatctgaagactgatggcttcagtatggaatcatgc
aggagcatggtcaacctgatggacaaagacggtagtgcccgtttagggctggtggagttt
cagatcctctggaacaagatccgaaagtggctggtcattttcagagattttgacctggac
aagtccggggccatgagctcatatgagatacgtcttgctgtagagggagcaggtttcaaa
ctgaacaacaaactgaaccagattctggtagcccggtatgcggagaacgagatggtcgac
tttgacaacttcatctgctgcttggtcaagctggaagctatgttcaggtctttccagcac
ttcgacaaggatggatcaggacaggctgagatgaatataacggagtggctttacctcaca
atgtgtggttga
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