Pseudochaenichthys georgianus (South Georgia icefish): 117459932
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Entry
117459932 CDS
T09629
Symbol
valopa
Name
(RefSeq) vertebrate ancient long opsin a isoform X1
KO
K04256
c-opsin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pgeo01009
]
117459932 (valopa)
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
pgeo04030
]
117459932 (valopa)
Protein phosphatases and associated proteins [BR:
pgeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117459932 (valopa)
G protein-coupled receptors [BR:
pgeo04030
]
Rhodopsin family
Vision
Opsin
117459932 (valopa)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srsx
7TM_GPCR_Srw
7tm_4
7TM_GPCR_Srv
Motif
Other DBs
NCBI-GeneID:
117459932
NCBI-ProteinID:
XP_033956991
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All DBs
Position
15:6551774..6569073
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AA seq
384 aa
AA seq
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MDTLSLSVNAVSYTVAAELSMVDDPFNAPVRGIAPWNFTVLAVLMFVVTSLSLSENFIVM
FVTFKYKQLRKPLNYIIVNLAIADFLVSLIGGVISFLTNAKGYFFLGKWACVLEGFAVTY
FGIVALWSLTVLSFERFFVICRPLGNIRLQGKHAMLGLLFVWTFSFLCTFPPVLGWNRYT
ISKIGTTCEPDWYSTNMIDHSYIITFFATCFILPLGVIFFCYGKLLRKLKKVSHGRLATA
RKPERQVTRMVVMMIVAFMVGWTPYAAFSILVTACPTIHIDPRMAAIPAFFSKTAAVYNP
VIYVFMNKQFRKCLMQLFCGKGTIPDSHLNPTSERPGITADSQTGEMSAIATRIPVGGNR
SDDSPTDCGSLVQLPIAENKVCPM
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggatactctgagtctgtcagtgaacgcggtgtcctacacggtggcggctgagctctcc
atggtggatgacccctttaacgcgcccgtccggggcatcgcgccctggaacttcaccgtc
ctggccgtgctcatgttcgtggtcacctcgctctctctgagcgagaacttcattgtcatg
tttgtaacgttcaagtacaaacagctgagaaagcccctcaactatatcatagtcaatctc
gccatcgcggactttctggtgtcgctcatcggtggagtaataagtttcctgacaaacgcc
aagggttatttcttccttgggaagtgggcttgtgtcttggaagggtttgctgttacatat
tttgggatcgtggccctgtggtccctcaccgttctgtccttcgaacggttcttcgtaatc
tgccggcctctggggaacatccgtctgcaagggaagcacgccatgctggggctgctgttc
gtctggaccttctccttcctctgcaccttccctcctgtgctgggctggaacagatacact
atcagcaagatcggaaccacgtgtgagcctgactggtattccaccaacatgatagatcac
agctacatcatcactttcttcgccacctgcttcattcttcctcttggagttatattcttc
tgctatggaaagctcctgcggaagctcaagaaggtgtctcatggtcgtctggccactgcc
aggaagcctgagaggcaggtgacccgcatggtggtgatgatgatcgtggccttcatggtg
ggctggacgccgtacgcagccttctccatcctggtcacagcgtgtccaaccatccatatt
gaccccaggatggctgccatccctgccttcttttccaagacagctgctgtctacaaccca
gtcatctatgtcttcatgaacaaacagttcaggaagtgcctcatgcagctcttctgtggc
aaagggactatcccagacagccacctgaacccgacctcagagcgacctgggattactgca
gacagtcaaacaggagaaatgtcggccattgcaactcgcatccccgtggggggcaacaga
tctgatgattctcctaccgactgtggctcattagtccagctgccgatcgcagagaacaaa
gtgtgtccaatgtaa
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