Pseudochaenichthys georgianus (South Georgia icefish): 117459961
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Entry
117459961 CDS
T09629
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117459961 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pgeo04121
]
117459961 (herc4)
Enzymes [BR:
pgeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117459961 (herc4)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
HECT type E3
117459961 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
117459961
NCBI-ProteinID:
XP_033957033
LinkDB
All DBs
Position
15:complement(14705630..14723794)
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AA seq
1044 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIVVEPRKCEFFHGKKVCDVGCGLRHTAFLLEDGTVYTCGC
NDLGQLGHEKCRKKPEQVVALDAQIILAVSCGESHTLALNDKGQVFSWGQGSDGQLGLNN
FEECVRVPRNIKSLSDIQIAQVACGYWHSHALSRGGQVFSWGHNRYGQLGLGINGQSIST
PQIIQSLQGVPFTQISAGGAHSFALTLSGAVFGWGRNKFGQLGLNDCNDRSYPTLLKSLR
SQRVIYVSCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEINPRKVFELMGNVVTQIS
CGRQHTMAFTPSCGKMDAFGLAGNGQLGTRSTCNRKNPAPVKGPWGASNSSMDTDSESGY
CVKRIYAGGDQSFAHYCTASDKDDVRIPDPHRRICTLNQEIIHKWCNYSPGRLPIEISNE
IELVFSSASCLNGSFLSTSNPDHYSTSSKCSGVDLSMARLLLHRVVQQDHHEIAQQIAAS
LEKNLIPRLSNSPPDIEALRLYLTLPECPLFSDRNNYVTIAIPFAKSLLSLKETPLKVLG
NWWSTFEPPVFQRMVELYKGVVVYLLQMHKMGIPSVEQRIFTCFLDTSLRLLEILHTVSE
RAGHIIEYDKFYIHELDDLIDIRNDYVTWIQRQMYPLGQDGVVTLCRYPFVFDAQAKTTL
LQTDAVIQMQMAVDQAQMQNFSSMFMPAVESVNPCLILIVRRENIVGDTMEVLRKSKNVD
YKRPLKVIFVGEEAVDAGGVRKEFFLLIMKELLDPKYGMFRYHEESRLIWFSNKTFEDID
LFNLIGIVCGLAIYNLTIVELNFPVALYKKLLKKKPTLEDLKELMSDVGRSLQHLLDYTE
DDLEDTFCLNFTITEENYGATEVLELIPNGEDINVNKSNRQDFVNAYVDYVFNTSVAPLF
ECFHAGFHKVCGGKVLELFQPNELQAMVIGNTNYDWTELEKSTEYKGEYWADHPTIRLFW
EVFHSLPIEKKKQFLLFLTGSDRIPILGMKSLKLVIQPTGGGEQYLPVAHTCFNLLDLPK
YRSLENLRDKLLQAIDHNQGFNLA
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggaaatgcttcctacggacagctaggcttgggtggaattgatgaagag
attgtggttgagccacgaaaatgtgaattcttccacgggaagaaagtgtgcgatgtgggg
tgtggcctcagacacacagccttcctgctggaggatgggacagtgtacacctgtggctgc
aatgacctggggcagctgggccatgagaagtgcaggaagaaaccagaacaggtagtggcc
ctggatgcacagatcatactggcggtgtcctgtggagagtcccatacactcgccttgaat
gacaaagggcaggtgttctcttggggccagggctcagatgggcagctgggcctaaataac
tttgaagaatgtgtccgtgtgcctagaaatatcaagagtttgtcagatatacaaatagct
caggtagcctgtgggtattggcactcccatgcactttcaagagggggccaagtcttctcc
tggggccacaatcgatatggacaacttgggctaggcataaacggacagagcatctcaacg
ccccaaatcattcagtctctgcagggcgttccttttactcagatatcagcaggcggggct
cacagcttcgccctcactctctcaggagccgtgttcggttgggggcgcaacaagttcggt
cagctgggtctcaatgactgcaacgatcgctcttacccaaccctgttgaagtccctcaga
tcgcagagagtgatttatgtctcctgtggagaagatcacaccgcagcactgaccaaggaa
ggaggtgtgtttacatttggagcgggaggatacggacaactcggacacaactctacaaac
catgaaatcaacccgaggaaagtgtttgagctcatgggaaacgtagtcacgcagatttca
tgtggaaggcagcacacgatggccttcacgccctcctgtggaaagatggatgctttcggg
cttgctggtaacgggcagcttggtacccgctccacttgcaacagaaaaaacccagcccct
gtcaaaggcccctggggagcctccaattcttcaatggatacagactcggagtcgggctac
tgtgtcaagaggatttatgcaggaggagaccagagctttgctcactattgcacggccagt
gacaaagacgatgtgaggataccagacccccacaggaggatctgcaccttgaatcaggag
atcatacacaagtggtgcaactactccccaggacgactcccaatagaaatctccaatgag
attgaactcgtgttctcctcagcaagctgcctcaacggatcatttctctcaacgagtaat
ccagatcactacagcaccagcagtaaatgttcgggggtggatctgagcatggctcgcctc
ctgttgcacagagtggtccaacaagatcaccatgagatcgctcagcagattgctgccagt
ctggagaagaacctaattcccagactaagcaactctcctccagacattgaagccctgaga
ctctacctcactctccctgaatgtcctctcttcagcgacagaaacaattacgtgaccatc
gctattccatttgccaaatccctcctcagtctgaaagagactccgctgaaggtgctagga
aactggtggtctactttcgagcccccggtcttccagcggatggttgagttgtacaagggg
gtggtggtttatctgctccagatgcacaagatgggcattccctcggtggagcagagaatc
ttcacctgtttcctggacacgtccctccggctcctggagatcctgcacacggtgagcgag
agagcaggacacatcattgagtacgataagttctacatccatgagttggatgacctgata
gacatcagaaatgactacgtcacatggattcagaggcagatgtacccactgggtcaagat
ggcgtggtgactctgtgcaggtatccattcgtgtttgatgcccaagcaaagaccacgctg
ctccagactgacgctgtcatacagatgcagatggcagtagaccaggcacagatgcaaaac
ttcagctccatgttcatgccagcggtggaatcagtcaacccgtgcctcatcctcatcgtt
cggagggagaatattgttggagacaccatggaggtcctcaggaagtccaagaatgtcgac
tacaagagacccctcaaggtgatcttcgtgggagaagaggccgtcgatgctggaggcgtc
agaaaggagttcttcctcctgatcatgaaagagctgctggatccaaaatatgggatgttt
cgttaccatgaggagtccaggctcatctggttttcaaacaagacctttgaggacatcgac
ctgttcaacctcatcgggatcgtctgtggtctggccatctacaacctcactatagtggag
ctcaacttccccgtggccctttacaagaagctcctgaagaagaagccaacactggaggat
ctgaaggagctcatgtcagatgtgggaaggagtctgcagcacttactggactacacagaa
gacgaccttgaggacactttctgcttgaactttacaatcacagaggagaactatggtgct
acagaggtcctggaattaatacccaatggcgaagacatcaatgtcaataaatcaaacagg
caggactttgtcaatgcgtacgtagactatgtgttcaacacatcagtggccccgctgttt
gagtgcttccacgcgggcttccacaaggtgtgcggtggaaaagttctcgagctgttccag
ccgaatgaactgcaagccatggtgattgggaacaccaactatgactggacggagctcgaa
aagagtactgagtacaaaggggagtactgggcggaccaccccaccatcaggctcttctgg
gaggtgttccacagtctacctatagagaagaaaaagcagttccttttgttcctcacagga
agtgaccgcatacccattctgggcatgaagagtctgaagctggtgatccagcccacaggt
ggaggagagcagtacctacctgtggcacacacctgcttcaacctgctggacctacccaag
tacaggagtctggaaaacctccgtgataaacttctccaggctatagatcacaatcaaggc
tttaatctcgcctga
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