Pseudochaenichthys georgianus (South Georgia icefish): 117460079
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Entry
117460079 CDS
T09629
Symbol
vps8
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117460079 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117460079 (vps8)
Membrane trafficking [BR:
pgeo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117460079 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
Clathrin
zf-RING_Vps41
TPR_VPS8_2
zf_RING_Vps8_fungal
zf-RING_UBOX
zf-RING_11
zf-RING_5
Beta-prop_WDR5
zf-RING_2
PHD_4
zf-C3H2C3
TPR_GEMI5
Beta-prop_EML_2
EIF3I
zf-C3HC4
Beta-prop_WDR3_1st
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
117460079
NCBI-ProteinID:
XP_033957198
LinkDB
All DBs
Position
15:complement(5313242..5424570)
Genome browser
AA seq
1403 aa
AA seq
DB search
MSESPDARSLLSASSQLNLMEIDAIDDKEFDIPQVDTPPTLESILNELEDEEEPFVLEDT
CVLNTDNMDAHSCDTSSLASSDSGEPAHLKRKRRTVDLNATVHGSVLRHSLLKGISAQIV
SAADKVDAGLPTAITVAGVIVVGTSHGLALVFDTNQALRLCLGTKATGAEFGAVSALSVN
HDCSRLLCGFAKGQITMWDLASGKLLRTITDAHPPGTAVLHVKFTDDPTLAVCNDSGGSV
FELAFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRAPPDFRDHPITHYSLLAMASLTKILV
IGLKPSLKVWMTFPYSKSDPSSVPQLAWQFVPVQKTLNPVLAFCKGDTVHFLLVKKEDTG
TIHVIKQKQLQLSCDIISLSWINSRTLVLVDSHEKLQVVDRPSQEVLETLDLEQVQLVYN
SRHFKSLATGGNVSQALALVGEKACYQSVSSYAGQIVYLGTQGWCSAHIMALRNWRERID
CLLKQEHFVEALSLAWSFHEGTAKAVVGLVGDQMKKKGVVGDKMVEILFQFAEHALKKCP
EHGKIQVMEQHFHDVVPVLVDYCLLLKRADLMFNQLYDRLLENSVAKGVFLEALESYIVA
DRLGHLTTPIMRDLLAHYHGNGMMDSLERCIVHLDVTSLDIQQVVQVCWENQLYDAMLYV
FNSGMNDYITPMEKLFAVIGPPLTEGRGLTDEEVVMGNKLLVYISCCLAGRAYPLGDIPE
DLVVQVKNQVFEFLIRRHSGDSLEKEELFPFIRTLLHFDTREFLNVLAMTFEDFKNDKQA
LEYQQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCC
PDDDSRHTERQQVLLELLQVGGVVQFNEERLLTLAEKANFYQICEFLYEKKHLFDRIIDC
YLRDPLRKGEIFSYIHNLLSMPGYSAEEKQTVKDKVLQHIQELVTLDPSKSADMVLFHFA
EEVQQIISELQDDQLLFRFLSCLLEPREGHLSGTMLPLQRDLHELLLDLLCRFGPRQLLG
FLQTSQHYRLEEAIQTTQKYHHSEATAYLLEMKGDVHGAFAVLLETLKEKLSVLTAESER
ADAGGEERDRDHTLSRVKESLNDIIELCHRSSDSLDQQQREVLWFPLLETMMASQKQVKG
LNDEHTFEVLKELTMKVLNCMSSFIPLPAIIQRILQDPVYGRGKLAEIQGLILGMLDTFN
YEQTLLETTTSLLNHDLHWSLAHLRAAVTRGLHPRQDHCNICLQQYKRRHDSAEEIIVFS
CGHLYHYQCLQQKACGGGVTSELNQRWSCYKCSSSQGGRGGDXTTELKRGRITSLAQTRV
TSVHHDGGAEANGKKVFVEAMLDSQQEQSWDQLRCLYRGPSRLSILAELSQCQSNEKTGL
LMPTQPGTESFQLKLSPPPLIEE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtctccggacgcccgcagcctcctctcggcctcctcacagctcaacctgatg
gagatagacgcgatcgatgataaagagtttgacattccccaagttgacacacctcccacc
ctggagagcatccttaatgagctggaggatgaggaggagccctttgtgttggaggacacc
tgcgtgctcaacacagacaacatggacgctcactcctgtgacacctcctctctggccagc
tctgacagtggagagccagcacacctcaaacgaaagaggaggacggtggacctgaacgcc
acggtgcacgggtctgttctccgacacagcctgctgaagggcatctctgcacagatcgtc
tctgctgctgacaaagtggatgccggcctgccgacggctataacagtggcgggtgtgatt
gtggtaggaacgtctcatggtctggctctggtcttcgataccaatcaggctctgcggctg
tgtctgggtaccaaggcaacgggggcggagtttggagctgtctctgctctgagcgtcaac
cacgactgctcacgacttctctgcggcttcgccaaaggacagatcacaatgtgggatcta
gccagtgggaagctcctgagaacaatcactgatgcccaccctccaggaacagcagtactg
catgtgaagttcacagatgacccgactcttgcagtgtgcaatgacagtggaggatcagtg
tttgagctggctttcaggagggtgatggggatgcggtcctgtgactcgcgctgtctcttc
agtggatctaaaggggaggtgtgctgtatcgagccgctgcgtgcccctccagacttcaga
gaccatcccatcacacactactctctgctggccatggcctccctcactaagattctggtc
attggactgaagccctcgctgaaggtctggatgactttcccctacagcaagtcggacccg
tccagtgttcctcagctggcctggcagtttgttcctgttcagaagacgctcaaccccgtc
ctggctttctgtaaaggagacacagtccacttcctgctggtaaagaaggaggacacgggc
accatccatgtcatcaaacagaaacagctccagctcagctgtgacatcatcagcctgagt
tggattaacagccgtaccctggtcctggtggacagccatgagaagctgcaggttgtggac
cggcccagtcaggaggttctcgagactctggacctggagcaggtgcaactggtctataac
agccgacatttcaaatcgctggccactggagggaatgtctcccaggctctggctttagtg
ggagagaaggcctgctaccagtccgtctccagctacgcaggacagatcgtctatttgggt
acacaggggtggtgttccgctcacatcatggctctgaggaattggagagagcgtatcgac
tgcctgctgaagcaggagcatttcgtggaggctctctctctggcctggtccttccatgag
ggaactgctaaagctgtggttggtcttgttggagatcaaatgaaaaagaagggagttgta
ggggacaagatggtggagatcctcttccagtttgcagagcatgctctgaagaagtgtcca
gaacatggcaagatacaagtgatggagcaacacttccacgatgtggttccagtcctggtg
gattactgcctgctgctgaagagggcagacctgatgttcaaccagctgtacgaccggctg
ctggaaaactctgttgctaagggagtcttcctggaggccctcgagtcgtacatcgttgcc
gaccgcctgggtcacctcaccacacccatcatgagggacctcctggcccattaccatggc
aacggtatgatggacagcctggagagatgcattgtccatctggatgtgaccagcctggac
atacagcaggtggttcaagtttgttgggagaaccagctctatgatgcaatgctctacgtc
ttcaacagcggaatgaatgactacatcacccctatggagaaactttttgcagtaattggc
ccaccacttacagaggggaggggcctcacagatgaggaagtggtgatgggaaacaaactg
ttggtgtatatcagctgctgtcttgcaggcagggcgtatccactaggagacatccctgaa
gacctggtggttcaagtcaagaaccaggtgtttgagtttcttatccgtcggcattcaggc
gactcgttagaaaaggaggagctctttccttttatacgtactctcctccactttgatacc
cgggagttcctcaatgtcctcgccatgacatttgaagactttaagaatgataagcaagcc
ctcgagtatcagcagaggatagtggacatcctactccaggtgatggtggacaacccagac
ttcactccctcccaggtgggcgggctcttcacctttttggctcgtcagttggccaagcca
gacaacacactgtttgtgaacaggaagctctttgatcaggtgctggagttcctgtgttgc
ccagacgatgactctcgacacactgagaggcagcaggttctgctggagctgctgcaggtc
gggggggtggtccagtttaatgaagaaaggctgctaactttggcagagaaagccaatttc
taccaaatctgtgaatttctctatgagaagaaacatctgttcgaccggatcatcgactgc
tacctgagagaccccctcaggaagggggagatcttcagctacatccacaatctgctgtcc
atgcccggctacagcgctgaggagaaacaaacagtgaaggacaaagtgctgcaacacata
caggagctggtgacccttgaccccagcaagtcagctgacatggtgctgtttcacttcgct
gaagaggtgcagcaaatcatctctgagcttcaggatgaccagttactcttcaggttcctc
agctgcctcctggagccacgggagggccatctctcagggaccatgctgcctctgcagagg
gacctccatgagctcctgctggacttactgtgccgcttcggcccccggcagctcctgggc
ttcctgcagacctcccagcactacagactggaggaggccatacagacaactcagaagtac
caccacagcgaggccacagcctacttgctggagatgaagggagatgttcatggagctttt
gctgtcctgttagagactctgaaggagaaactgagtgtcctcactgctgagagtgagaga
gcagatgcagggggggaggagagagacagggaccacacactgagcagagtgaaggagtcg
ctgaatgacatcatagagctgtgccaccgaagctctgacagcctggaccagcaacaaaga
gaggtcttgtggtttccacttctggagaccatgatggcctctcaaaaacaagtgaagggg
cttaatgacgaacacacatttgaggtgctgaaggagctgaccatgaaggttctcaactgt
atgagcagctttattcctctgcctgctatcatccagcggatactgcaggacccggtctat
gggagaggaaagctggcagagatccaaggcctcatccttggtatgctggatacctttaac
tatgaacagactcttcttgaaaccaccaccagtctgttgaaccatgacctccactggtcc
ctcgctcaccttcgcgccgccgtcaccagggggctgcacccccgacaggaccactgtaac
atctgcctgcagcagtacaagaggaggcatgactctgcggaggagataatcgtgttcagc
tgcggccacctgtaccactaccagtgtctgcagcagaaggcctgcggggggggcgtcact
tcagagctcaaccagcgctggagctgctacaagtgttcctccagccagggggggaggggg
ggggacnntaccaccgaactgaagagaggccgcatcacgtccctggcacagactcgtgtt
acgtcggtgcatcatgacggaggagcagaggctaacgggaagaaggtgtttgttgaagca
atgctggactctcagcaggagcagtcctgggatcagctgcgctgtctgtacagaggaccg
tccaggttgtccatccttgcagaactctcacaatgccaaagcaacgaaaagacagggcta
ctgatgccgacccaacccgggacagagagtttccaactcaaactctctcctccaccctta
atagaagaatag
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integrated database retrieval system
