Pseudochaenichthys georgianus (South Georgia icefish): 117460441
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Entry
117460441 CDS
T09629
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117460441 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117460441 (u2af2a)
Spliceosome [BR:
pgeo03041
]
Complex A
U2 snRNP components
U2 related factors
117460441 (u2af2a)
Complex B
117460441 (u2af2a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Transformer
Motif
Other DBs
NCBI-GeneID:
117460441
NCBI-ProteinID:
XP_071062011
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Position
16:complement(30136897..30145178)
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AA seq
490 aa
AA seq
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MSDFDEFERQLSENKQGDVFSDSLTAERDKENRHHRRSSSRSRSRERKRRSRDRDRRSRD
RRGESKEERRHRRSSPASFPVDNAGSRSPHREVPAKKKNKVKKYWDVPPPGFEHITPMQY
KAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMD
FFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR
RPHDYQPLPGMSENPSVYVPGTQPINGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS
FGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKN
ATLTSINQTPVTLQVPGMNSSVTQMGGLPTEVLCLMNMVAAEELLDDDEYEEIVEDVKDE
CSKYGQVKSIEIPRPVDGLEVPGTGKIFVEFMSVFDSQKAMQGLTGRKFANRVVVTKYCD
PDAYHRRDFW
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcgacgaatttgaaaggcagctgtctgaaaacaaacaaggtgatgtattc
tcagactctttgaccgctgaaagggacaaagagaaccgccaccaccgcaggtcttcctct
cgtagccgaagcagagagaggaaaaggaggagcagagacagggatagacgcagcagggac
cgccgtggggaaagtaaggaggagcgcagacacaggcgcagctcaccagccagcttcccc
gtggacaatgctggaagccgttctccacaccgcgaggtgccggcgaagaagaagaacaag
gttaaaaagtactgggatgtccctccaccgggctttgaacacatcactcccatgcagtac
aaagccatgcaagctgcaggccagatcccagccacagccctcctgcccaccatgactcca
gatggcctggctgtgacccccaccccggtgcctgtggtgggcagccagatgacccggcag
gcccgccggctctacgtgggtaacatcccatttggaatcacagaggagtccatgatggac
ttcttcaatgcccagatgcgtttgggtggtcttactcaggcccctggaaaccctgttctt
gcagtacagatcaaccaggataagaactttgccttccttgagttccgttcagtggacgaa
actacacaggcaatggcctttgatggcatcatctttcaaggccagagtctcaagatccgt
cgtccacatgattaccaacctctacccggcatgagcgagaaccccagtgtctatgtgcct
ggtactcagccaattaatggtgtcgtttccacagttgttcctgactcagcccacaagctc
ttcattggaggtttgcccaactacttgaacgatgaccaggtgaaggagctcttgacatcc
tttggtcccctgaaggctttcaacctggtgaaggacagtgctacaggcttatctaaagga
tatgcgttttgtgaatatgttgatgtcaaccttaatgaccaggctattgctgggctgaac
ggcatgcagctgggagacaagaagctcctggtgcagagagccagcgtgggatccaagaac
gccactctcacgagtataaatcagaccccagtgacgctgcaggtgccgggtatgaacagc
tcggtgactcagatggggggcctgcccaccgaggtgctgtgtctgatgaacatggtggcc
gccgaggagctgctggatgatgacgagtatgaggagatcgtggaggacgtcaaggacgag
tgcagcaagtacggccaggtcaagagcatcgagatcccccgacctgtggacggcctggag
gtgcccggcaccggcaagatctttgtggagttcatgtccgtttttgactcccagaaggcc
atgcaggggctgacgggaaggaagtttgccaacagggtggtggtgaccaaatactgcgat
ccagatgcttatcaccgccgagacttctggtag
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