Pseudochaenichthys georgianus (South Georgia icefish): 117460504
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Entry
117460504 CDS
T09629
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117460504 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117460504 (cnot10)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117460504 (cnot10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_19
TPR_14
ANAPC3
TPR_7
TPR_8
TPR_MalT
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
117460504
NCBI-ProteinID:
XP_033957842
LinkDB
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Position
16:10970958..10996575
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AA seq
758 aa
AA seq
DB search
MCQSTELNPISTEPTHTGFLTILEKATDMAENTEQNEAKHDSSSSPGVTDQEKEIAASAY
EAYLSGKYDESLKHLETLQDLNKEDYKIAMNKAVVEFYKSSQTTTGTLKQTLLAMKNQVH
TSAEDIDGLDDVENSWLYYNQAIIHYHMRQYSDAIAIGERLYQFLEPFEKFAQAVCFLLV
DLYLLTFQPEKALHLLAVLDKLSTTGSSKNGKGESSNKDGANQKAEFTAMMEAAKSKMHQ
YKVRAYIQMKSSKACKREIKSVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAE
HPGPIKTGECVRCMFWNNLGCIHFAMGKHNLGIFYFKKALQENDHTCAQLGDGSNAHAKK
FTGIPMCALLANKRYELLYNCGIQLLHIGRPLAAFECLMEAVQVYHSNPRLWLRLAECCI
SANKGSEQESKGLPCKKGIVQSIVGQGYHRKIILASQSTQNTIYSEGQSAAIPVASMEFA
AIGLRNALLLLPEHQQDAKTENGSKICSQAGSTESGNENSDPYSGKGPEADKFLSAAPSS
PLRKQEVENLRCSILACSAYVALALGDNLMALNHADKLLHQNKVSGSLKFLGHLYAAEAL
ISLDRISDAIGHLNPENVSDVSMGVLSSEQDQGSEKGEEPVEASGKQTPLCYPSSVTSAR
AMMLFNLGSAYCLRSEYEKARKCLHQAASMVNTKEIPPEAILLAVYLELQNGNTQLALQI
IKRNQLLPSPVQRVSPDSRKKPVQPIQLPSSFTQVQRK
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgtgccaatcaacggaattaaatccaatctcaacggaaccgactcatacaggttttcta
actatcctcgaaaaggccacagatatggcagaaaatacagaacaaaacgaagcaaagcat
gacagctcatcgtcccctggcgtgacagaccaggagaaagaaatagcagccagtgcatat
gaagcatatttgagcgggaagtacgacgagtcactcaaacacctggaaaccctgcaggac
ctcaacaaggaggactataagatcgctatgaacaaagccgtcgtagagttttacaaaagc
agtcagactacaacagggactctgaagcagacactactggcaatgaagaaccaggttcac
acatcggcagaggacattgatgggttggatgatgtagaaaatagttggctgtactataat
caagccatcatccactatcacatgcgacagtactctgacgccatcgcaataggagagagg
ctctaccagttcctggaaccgtttgagaagtttgctcaggcggtgtgcttcctgctggtg
gacctgtacctgctcaccttccagccagagaaggccctccacctgctggctgtgctggac
aaactgtccacaacaggaagcagcaagaacggcaaaggagagagttcaaacaaagatgga
gccaaccagaaggcagagttcacagccatgatggaggccgccaagtcaaagatgcaccag
tacaaagtgagagcctacattcagatgaaatcctccaaggcctgtaagagagagatcaag
tcagtgatgaacacagcagggaactctgcaccttcacttttcctcaagagtaactttgag
tacctgagaggaaactaccggaaagcagtgaagctgttgaacagttccaacatcgcagag
catcctggacccatcaagacgggggaatgtgttcgatgtatgttctggaacaatctgggc
tgcatacacttcgcaatggggaaacacaacctaggcattttctacttcaagaaggcgctg
caagagaacgaccacacgtgcgcacagctaggagacggcagcaacgcgcacgctaagaag
ttcacaggtatcccgatgtgcgctctgctagcgaacaagcgctacgagctgctgtataac
tgcgggatccagctgctgcacatcggaaggcctctggctgccttcgagtgtctgatggag
gccgtgcaggtgtaccactccaaccccagactgtggctgcgcctggcagagtgctgcatc
tctgctaacaagggatcggagcaagaaagcaaaggtttaccttgtaaaaaaggtatagtt
cagtctattgtcgggcaaggctaccatcgcaagatcatcctggcatcgcagtctacccag
aacactatatacagtgagggccagtcagcagctatcccagtagccagtatggagtttgca
gccatcggcctgaggaacgcgctgctgctgctgcctgaacaccagcaggacgccaagaca
gagaacggctccaagatctgcagccaggcagggagcacagagagcggcaacgagaacagc
gacccctacagtgggaagggtccggaggccgataagttcctgtccgctgcaccatcgtcc
cctctcaggaaacaggaagtggagaacctcaggtgctccatcctggcctgcagtgcctat
gtggcgttggcactgggagacaacctgatggcgctgaaccacgctgacaaactgctccat
caaaacaaggtgtccggatcgctcaagttcctgggtcacctctatgctgctgaagccctc
atctcattggacaggatctcagacgctatcggacacctcaacccagagaacgtgagcgac
gtgtcgatgggggtgctgagcagcgagcaggaccaaggttcagagaaaggagaagagcct
gtggaggcctcagggaagcagacccccctgtgttaccccagcagtgtgacgtcagcccgg
gccatgatgctcttcaacctgggcagcgcctactgtttgaggagcgagtacgagaaggcc
cgcaagtgcctgcatcaggctgcatctatggtgaacactaaggaaattccacctgaagcc
atcctgctggcagtgtacttggagctgcagaacggaaacacccagctggccctgcagatc
atcaaacggaaccagctgctgccctcgccggtccagagggtctccccagactcccgcaag
aaacccgtccagcccatccagctgccctcatcctttacacaagttcagcgcaaatga
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