Pseudochaenichthys georgianus (South Georgia icefish): 117460551
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Entry
117460551 CDS
T09629
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117460551 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117460551 (dhx16)
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117460551 (dhx16)
Spliceosome [BR:
pgeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117460551 (dhx16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
117460551
NCBI-ProteinID:
XP_033957939
LinkDB
All DBs
Position
16:complement(33613661..33630946)
Genome browser
AA seq
1050 aa
AA seq
DB search
MANLEQWVNDRLHDILGLSDRYVSQFMIGTARRASSSEDFVERLEKTGTIDIEPSVVAFA
KELFDKIPRKQVVEKPARAMEREAIEMDKKNRTYTLLEDSDSDGEVVVEKQKGKKKSKDK
GNRRKHIRQKKESESSSEEEAPKRQGDQKSLKKNDDEEEEEEWEKEERERQQDIEARDAF
AERVKLKDKDKTRNITERTDKKAYEEAQKRLKMAEDDQNNMLPELRKRSRWDYLKKREAE
KLEDLEAEIHDDEYLFHTDELTERERKELEYKRNLRDLAKDYKKAGAKEQDERKNRYYMP
EEKRNKEVPQRDLELEEHPMELGGEQGRWEEERLKTASLSFGAKREREIGMKLEQEKYQL
ILEEDEMIDFVSTAITMKGTRTEEEEEAIALSQAEMKKQSMQEVRRSLPIFPYREDLLAA
IQEHQILIIEGETGSGKTTQIPQYLLEHGYTQGGMKIGCTQPRRVAAMSVAARVAQEMSV
KLGNEVGYSIRFEDCTSERTILKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTLHTDI
LFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEADY
LEACVVSVLQIHVTQPPGDCLVFLTGQEEIEACCELLQERCRRLGSKIAELLVLPIYANL
PSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIV
TPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTNLGNVVLLLKSLG
INDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILAS
EQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARQNFVVPGGDHLVLLNVYTQWLES
DYSTQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVVSSHGETMPIRKSVTAGYFYHT
ARLSKGGYKTVKHQQTVYVHPNSCLFEEQPRWLIYHELVFTTKEFMRQVIEIDSSWLLEV
APHYYKSKELEDSSSKKMPRKQGKAKEELG
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctggagcagtgggtgaatgaccgtctccatgacattctcgggttgagtgac
agatatgtgtctcaattcatgatcggcactgcaaggagagcctccagttctgaagacttt
gtggagcgactggagaagacgggcacgattgacattgaaccgagtgtggttgcctttgcg
aaagagctttttgacaagattcctcgcaaacaggttgtggagaaaccagcccgggcgatg
gaacgggaagccattgaaatggataagaagaatcggacatacacgttactggaggacagc
gacagtgatggagaagttgtggttgagaaacagaaagggaaaaagaaaagcaaagacaaa
gggaacaggaggaagcacatcagacaaaagaaagagagtgagtcttcaagtgaggaggaa
gcacctaaacgccaaggggatcagaagtctctcaagaagaacgacgatgaagaagaagaa
gaagagtgggagaaggaagaaagggagcgacagcaggacattgaagcgcgagatgcattt
gcagagcgagtgaagctgaaagacaaggacaagacccgcaacataacagagaggactgac
aagaaggcgtatgaggaagctcagaagaggctgaaaatggctgaagatgaccagaataac
atgttgccagagttgaggaagcgctctcgctgggattacctaaagaagagggaggcagag
aagctggaagatttggaggcagagatccatgacgacgagtaccttttccatacagacgag
ctgactgagagggagagaaaggagttggaatacaaacgcaacctccgagacctggctaaa
gattacaagaaggctggcgccaaggagcaggatgagaggaagaacagatactacatgccg
gaagagaagagaaacaaggaggtgccacagagggacctggagctggaggagcatcccatg
gagctgggaggagagcagggccgctgggaggaggagaggctgaagacggcctccctcagc
ttcggggccaagagggagagagagatagggatgaagctggagcaggagaagtaccagctg
atcctggaggaggacgagatgatcgacttcgtcagcactgctatcaccatgaagggaact
cgcactgaagaggaagaggaggccatagctctgtcccaggcggagatgaagaaacagtcg
atgcaggaggtcagacgcagcctgcccatcttcccctacagagaggacctgctggctgcc
atccaagagcaccagatcctgatcattgagggggagacgggctctggcaagaccacccag
atcccgcagtacctcctggaacatggctacacacaaggaggcatgaagatcggatgtact
cagcctcgcagagtggcagccatgtcagtagctgctcgagtggctcaggaaatgagtgtg
aagctgggtaacgaggtgggttacagtattcgttttgaggactgcacatcagagaggaca
attctcaagtacatgacagacggcatgctgctccgagagtttctcactgagcctgacttg
gccagctacagtgtagtcatcatagatgaagcccatgagcggacgctccacacagacatc
ctgttcggtctgatcaaagacatcgcccgcttcaggcccgacctgaaggtgctggtggcg
agcgccactctggacaccgagcgcttctcctgcttctttgacgacgcgcctgtcttcagg
atccctggcaggaggttccccgtggatatcttctacaccaaagctccagaggcagactac
ctggaagcttgcgtggtgtcggtgcttcagatccacgtcacccagccgcccggagactgt
ctggtcttcctcactggacaggaggagattgaagcgtgttgcgagctgcttcaggagaga
tgcaggcgacttggatctaagatagccgagctgctggtccttcccatctacgccaacctg
ccgtcagacatgcaggccaagatcttcaaccccaccccgcctggagcccgcaaggtggtg
gtggctaccaatatagcagaaacctccctcaccatagatggcatcatctacgtcattgac
cccggattctgcaaacagaagagttacaacgcccgcaccggcatggagtccctcatcgta
acaccctgctcccgggcttcagccaaccagagagcaggccgtgcaggcagagtggctgct
gggaaatgtttcaggctttacacagcctgggcctttaaacatgagatggaggaatcgact
gtgcccgagattcagaggaccaacttgggaaatgtcgtcctgctgctgaagagtctcggc
atcaatgacctcattcactttgacttcatggacccacctcctcacgagactctggtgttg
gcgctggagcagctctacgccctgggagcgctcaaccacctcggagagttgaccaagctg
ggacgcagaatggctgagctcccggtggaccccatgctgagcaagatgatcctagcctcc
gagcagtacaagtgttcggaggaagtgttgacgatagcagccatgctgtcggtgaacaac
tctattttctaccggcccaaagacaaggtggtgcatgccgacaacgccaggcagaacttt
gtggtgccaggaggagaccacctggtgctgctcaacgtctacacacagtggctggagagc
gattactccacacagtggtgctacgagaacttcatccagttccgctccatgagaagagcc
cgggacgtccgggaccagctggagggtctgatggatcgcatagaggtggaggtggtgagc
tcccatggagagaccatgcccattcgaaagtcggtgactgcaggatatttctaccacacg
gcacgactgagcaaaggcggctacaagacggtgaagcaccagcagacagtctacgtccac
cccaacagctgtctgttcgaggagcagccccgctggctcatctaccacgagctggtcttc
accaccaaggagttcatgagacaggttattgagatagacagcagctggcttcttgaagtg
gctccccactactacaagagcaaagagctggaggacagcagcagcaagaagatgcctcgc
aagcagggcaaagctaaagaggagctgggctga
DBGET
integrated database retrieval system
