Pseudochaenichthys georgianus (South Georgia icefish): 117460653
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Entry
117460653 CDS
T09629
Symbol
tnxba
Name
(RefSeq) tenascin
KO
K06252
tenascin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
pgeo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117460653 (tnxba)
04518 Integrin signaling
117460653 (tnxba)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117460653 (tnxba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pgeo00536
]
117460653 (tnxba)
Glycosaminoglycan binding proteins [BR:
pgeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117460653 (tnxba)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fibrinogen_C
fn3
Fn3_Dep-1_3rd
EGF_Tenascin
EGF_Teneurin
EGF_TEN
Fn3_Dep-1_2nd
Pur_ac_phosph_N
EGF_2
Motif
Other DBs
NCBI-GeneID:
117460653
NCBI-ProteinID:
XP_033958094
LinkDB
All DBs
Position
16:complement(25472800..25477706)
Genome browser
AA seq
989 aa
AA seq
DB search
MKVFISEGCDSNNGKELKLKPGEPLVMTHKISLVPGSCSGGCDAEMAALQGRVARLEREM
TSIKEKCPCSANCPNGCSGNGECQNGKCICQQGFSGPDCSKCAQGAECHKKTAKGKVKVT
METMTKQSNKDKENKNEKMNTVENTLVQKKEQKKASDVKETTTKTKVAANSKAGAKKESS
VNKITITKTSGKKTSLQTLGQVLLKHEGRKQEEARKGKTTSKKFLQKPDNKLVEDGTKDK
AHPKTNQLKDQPQTNVTLSIVKKSNSTAKIVTILTKGVGANRTRTGKETMEQSTLAEKNV
TQSSGPKRTKKVKVETTNVQSVDNRNTGAGKVEKEKDVQKSQYQVNSTLASTTHDSARKA
GGSGLGSVKVVNISSYSFTVTWSAPQGMFKNFTVIRTEPRTEGDEENHEEMEEVALEGDA
ASTAKNTTEVQVQSESTNTTAASGKAAAASGKTETKRISMMVPGSVRSVEFSNLQANTAY
VLQVYGSAAERKSKTHKATAITGPEPATEMVFSNVTDSSLNVSWSKPKTTFSGVRVTYTN
IITGESRFVTVESHQSYVVLSKLSAGTSYIIIVTTTQGRTQSDILTSLMTTVPAPPTHLQ
VVNVTDTKAVLQWTPSLGKVDRFIISYESSKTPNVTVTVMLSGSSVEHQLRGLQRGTVYT
VKVLSQKDSLQSMAISTTFTTPNLVKASEVGTRSAVIAWRTSTVVYYSYRLIYQVAGEET
KEVILDQSTTEYKLTGLLPMSRYIVLVQGEREGQYTSVVTTEFITGNLRFPFPTECSQEL
LNGALQSGEVDIYPDGKEGGAVRVYCDMETDGGGWTVFQRRMNGKTDFYRTWSEYSAGFG
NLSEDFWLGNELLHNLTSVGPVSLRVDLQSGNDTAYAHYANFTIDSAERHYTLAVSGYTG
TAGDSMRYHNGRPFSTRDKDTDPLGIHCARAYMGGWWYKNCYKTNLNGLHSINSNNQGVV
WIDWKGKDSSIAFTEMKFRPARFSPVTHG
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgttcatcagtgaaggctgtgactcaaacaatggcaaagagctgaagttgaag
cctggcgagcctctggtgatgacgcataagatcagcttggtgcccggtagctgcagtggg
ggatgtgacgctgagatggctgcgctgcaaggacgcgtagcccgactggaaagagagatg
acttccattaaagagaaatgtccatgttctgctaattgtccaaatggatgtagtggcaat
ggagagtgtcagaacgggaaatgtatctgccaacagggattcagcgggccagactgcagt
aagtgtgcacaaggagctgagtgtcataagaaaactgccaaaggaaaggtcaaggtaacc
atggaaacaatgaccaagcagtcgaacaaagacaaggaaaacaagaatgagaaaatgaac
acagtagagaacacacttgtccagaagaaagagcagaagaaggcgtctgacgtcaaagag
accaccactaaaaccaaagtggctgctaattctaaagcaggtgctaaaaaagaatcctcc
gttaacaaaatcactattacaaagacaagtggcaaaaagaccagtctccaaacacttggt
caagttctgttgaaacatgagggcagaaagcaggaagaggcccgcaaaggcaaaacaaca
tctaaaaagtttctccaaaaacctgacaataagcttgttgaagatggaaccaaagataaa
gcacatcctaaaacaaaccagctaaaagaccaacctcaaacgaatgtaactctgagtatt
gtgaagaaatctaatagcacagctaaaattgtgaccattctgaccaagggtgttggagca
aacagaaccagaacagggaaggagaccatggagcagtccacactggctgagaagaatgta
actcaatcatctggacctaaacgcaccaagaaagtaaaagtagaaaccacaaatgtgcaa
tctgtagacaacagaaacactggcgctggcaaagttgagaaagagaaagacgtacagaag
agtcagtatcaagtgaattctactttggcatcaaccacccatgactccgcgaggaaggcg
ggaggatctggattaggctctgtaaaggtcgtaaacatatcctcctacagcttcactgtc
acatggtcagcaccacaagggatgttcaagaacttcaccgtgatcagaacagagccccga
acagagggcgacgaagagaaccacgaggaaatggaagaagtagcgctcgaaggagacgca
gcctcaacagctaagaacacaactgaagtccaggtacagagtgagagcaccaacacaact
gctgcctctggtaaagcagctgcagctagtggcaaaactgaaacaaagaggatctctatg
atggtccctggcagcgtgcgctctgtagagttcagtaaccttcaggcaaatacagcatat
gttcttcaagtatatggctctgcagctgaaaggaaatcaaagactcataaagcaactgca
attacagggcctgagccagccacagagatggttttcagcaatgtaacagattcttccctc
aatgtttcctggtccaaaccaaagaccacattctcaggcgtcagggtgacgtacaccaac
atcatcacaggggagagccgctttgtgaccgtggagtctcatcaatcttacgtggttctg
tcaaagctgtctgctggaacctcttacattatcattgtaacgactacacaaggcagaaca
cagagtgacatcctaacatcccttatgaccacagtgcccgctcctccaacacatctgcaa
gttgtcaatgtgacagataccaaagctgtgctgcaatggacaccaagtctggggaaagta
gaccgcttcatcatcagctacgagtcctctaaaactcctaatgtgacagtgacagtgatg
ctgtctggaagctcagtggagcaccagctcagaggtctgcagagaggcacggtgtacaca
gtcaaagtgctgagtcagaaggacagtctgcagagcatggccatctctactactttcacc
acacctaatctggttaaagccagtgaagtgggtactcgctctgcggtgatagcatggaga
acatccactgtggtttattacagctacagactgatctaccaggtggcaggagaggagaca
aaggaggtgatcctggatcaatccaccacagagtataagctgacagggttgttgccaatg
tcacgctacattgttctggtacaaggcgagagagaaggacaatacacatctgttgtcact
acagaattcatcacaggcaatctgcgtttccccttccctaccgagtgctctcaggagctg
ctcaatggagctctgcagtcaggagaggtggatatctacccggatggaaaagagggagga
gcagtcagagtctactgtgacatggagactgatggcggcggctggacggttttccagagg
aggatgaatggaaaaactgatttctacagaacatggagtgaatacagcgctggttttgga
aacctcagcgaagacttctggctcggaaatgagctccttcacaacctgaccagtgttggc
cctgtgagtctgagagtggatttgcaatctggaaatgacaccgcttacgctcactacgcc
aacttcaccattgattcagccgagaggcactacactcttgcagtgtctggctacactgga
actgcaggtgactccatgaggtaccataatggacgtccattctcaacccgcgacaaggac
actgatcctctggggatccactgtgccagggcctacatgggaggctggtggtacaagaac
tgctacaagaccaacctcaacggtcttcacagcatcaatagtaataatcagggagtggtc
tggatagactggaaaggtaaagactcttccattgccttcactgagatgaagttcagacca
gccaggttctctcctgtcacccatggctaa
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