Pseudochaenichthys georgianus (South Georgia icefish): 117460787
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Entry
117460787 CDS
T09629
Symbol
sema6cb
Name
(RefSeq) LOW QUALITY PROTEIN: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
KO
K06842
semaphorin 6
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
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Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Motif
Other DBs
NCBI-GeneID:
117460787
NCBI-ProteinID:
XP_033958237
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Position
16:complement(42691373..42898012)
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AA seq
1081 aa
AA seq
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MRPPPLLLALTLASFLPQLSSGGTPFPQDLEPISIVGRESSYLFPSFQGLMSDNDTVRLG
LDFQRMLRINRMLYIAARDHVFAINLASSSEQIIPQQKLTWKTKDVEKCTVRGKNSDECY
NYIKVLVPRNDETLFACGTNAFNPTCRNYKMSTLEQEGEEVVGQARCPFESRQSNVGLFA
GGDFYSATMTDFLASDAVIYRSLGESSPVLRTVKYDSKWLREPHFLHAIEYGNYVYFFLS
EIAVEYTTLGKVVFSRVARVCKNDNGGSPRVLERYWTSFLKARLNCSVPGDSFFYFDVLQ
SLTNVLQINHRPAVLGVFTTQANSITGSAVCAFYMDDIEKAFSGKFKEQRNSETAWTPVP
EDQVPKPRPGCCAGEGSAAAYKSSTTFPDDTLTFIKSYPLMDESVPSVNDRPYFTRTTSR
FKLTQIAVDTSAGPNKNHTVVFLGSDNGHVLKILASTEGANASFSSQLLEDIDVYNPSKC
NVQGEDRRVLGLELDRDHHALFVAFSSCVIRVPLSRCSDYTTCKKSCLSSRDPYCVWLKS
GSCATVSPGFKGSFEQDVENGYQQSPDTCHDVLATTRKQNTALDSAYGKTTPTSASSTYH
VAAFPKEAGDPDRGTGPDAPPPVGEQGSPDSEPISVEMEGVRRPPELDKTNHSVHYTLLI
ACVLVAFVLGAFLSGFLVSCYCNHTGHKTKKLSKDPEAPIPHALSLRSLAKLNGLLDSQS
KDDKLEVSSPKIYNSFFANSKEHHTPRRNGHHAMTMGDLVHPQHHLHHSSELSGLPTPDS
TPELPIKSMKAFKNQWEKNQNCNNAKEPKSHNSGSRPSSALLHPQVFPYSHSLSNGQPLM
GGYLHPDERKIHNVERVLSQQPYPGYSQKVMEVTSLDELLKHIHEASSSKNSQLMSPSGL
MAXRGGGQLAFANRIQPQIPETESAPYYSSSTLPRDSLTRRMDVPPDIPSHHQSTLERRH
SSQRHSLIAAAAKMPNGVGAGGGGGGMIPRQHSFSQRNCGPHQPPPLLARMNSTGSACEV
HYPHIPNGYLTRQHSYNGEQPEVQHRGAIVRRASSLKPDVPPKPLFIPATSPVNEQGKYN
Y
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgaggcccccccccctcctcctggctctcaccctggcctccttcctccctcagctgtcc
tccggaggcacgcccttcccccaggacctggagcccatcagcatcgtgggcagagagtcc
tcctacctcttccccagcttccagggcctgatgtcggacaacgacaccgtgcgcctgggc
ctggacttccagaggatgctgaggatcaaccggatgctctacatcgctgcccgggaccat
gtgttcgccatcaacctcgcatcttcgtcggagcagataatcccacagcagaaactgact
tggaagacgaaggatgtggagaagtgcaccgtgagaggcaagaacagcgatgaatgttac
aactacatcaaagtgctggtgccccgcaacgacgagacgctgttcgcatgcggcaccaac
gccttcaaccccacctgccgcaactataagatgtccactctggagcaggagggggaggag
gtggtgggacaggctcgatgcccctttgagtcgcgccagtccaacgtcggcctttttgca
ggtggtgatttctactcggccaccatgacggacttcttggcgagcgatgcggtgatttac
cgaagtctgggagaaagcagcccagtgctgcgtaccgtcaagtacgactccaaatggctg
agagagccccatttcctgcacgctatcgagtacgggaactacgtgtacttcttcttgagt
gagatcgcggtggagtacaccactcttggcaaggtggttttctccagagtcgctcgtgtc
tgtaagaatgataatggcggttccccgcgggtgctggaacgttactggacgtcattcctc
aaagcccggctgaactgctccgtgccgggagactccttcttctacttcgatgttctgcag
tcgctgacaaacgttctgcagatcaaccaccggccggccgtgctgggggtcttcaccacg
caggccaacagcatcaccggctctgcagtgtgcgcgttctacatggacgacatcgagaag
gccttcagtggcaaattcaaagagcagaggaacagcgagacagcgtggacgccggttccc
gaggatcaggtcccaaaaccaagacctgggtgctgcgctggtgagggatccgccgccgcc
tacaagtcgtccaccacctttcccgacgacacgctgaccttcatcaagtcgtacccgctg
atggacgagtcggtgccctccgtcaacgacagaccctacttcacccgcaccaccagcagg
ttcaagttgacccagatcgcggtggacacgtccgcggggcccaataagaaccacacggtg
gtgtttctgggctcagacaacgggcacgtgctgaagatcctggcgagcaccgagggggcc
aacgcctccttcagctcccagctgctggaggacatcgacgtgtacaaccccagcaagtgt
aacgtgcagggggaggaccggagggttctgggtctggagctggaccgagaccaccacgcc
ttgttcgtggcgttctccagctgcgtgatccgcgtgccactcagccgctgctccgactac
accacctgcaagaaaagctgtctgtcttcgcgggacccttactgcgtttggctcaagtca
ggaagctgtgccaccgtctcacctggcttcaaaggcagcttcgaacaggacgtggagaac
ggataccagcagagcccggatacctgccacgatgtcctggcgacaactcgcaagcagaac
acggcgctggattcggcgtatgggaagaccacacccacaagcgccagctccacctatcac
gtggcggcattcccaaaggaggcaggtgaccctgacagaggtacaggtcctgatgcccct
ccccccgttggggaacaagggtcacctgactcggagccaatcagtgtggagatggagggt
gtgaggcggcctccagagctggataagaccaatcacagtgtccattacaccctcctgatc
gcctgtgtgttggtggcgttcgtccttggcgccttcctatctggcttcctggtctcctgc
tactgtaaccacacgggccacaagaccaagaaactgtcgaaggatccagaggccccgatc
cctcacgccctgtccctgcgcagcctggccaagctcaatggcctcctggacagtcagagc
aaggacgacaagttggaggtgtcatctccaaagatctacaactctttcttcgccaacagc
aaggaacatcacacaccaaggagaaacggccatcacgcaatgacgatgggagacctggtt
cacccccaacaccacctgcaccactcctcagagctgtccggtctgccgacacctgactca
accccagaactgcccatcaagagcatgaaagccttcaagaaccagtgggagaagaaccag
aactgcaacaatgccaaggaaccaaagtcccacaactccggctccaggcccagctcagcc
ctgctccacccgcaggtcttcccatactcccatagcctgtccaatgggcagccactcatg
ggaggttatctccatccagatgaacgcaaaatccataatgttgaacgagtgctgtctcag
caaccgtaccccggttactcccagaaggtgatggaggtgacctcgctggatgagcttctg
aagcacatccacgaggccagcagcagcaagaactcccagttaatgagtccatcaggtctg
atggcgntgcggggtggaggtcagctagcattcgccaaccgtattcaacctcagatcccc
gagacagaatcggccccctactacagctcgtccaccttacctcgagacagcctcacccga
cgcatggatgttccaccagacatcccctctcaccaccagtccaccctggagaggaggcac
tcctcccagaggcactcgctgattgctgcagccgctaagatgccaaatggagtcggagca
ggcgggggtggaggaggaatgatacctcgccagcacagcttcagccaacgaaactgtggg
ccccatcagccgcctcccctcctggcccggatgaactcaacgggcagcgcctgcgaggtt
cactacccccacattcccaacgggtacctgacacgccagcacagctacaacggagagcag
ccggaggtccagcacaggggcgccatcgtccgccgggcctcctctctcaaacccgacgtc
cctccaaagcccttgttcatacctgccacgtcccccgttaacgaacagggaaagtacaac
tactga
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