Pseudochaenichthys georgianus (South Georgia icefish): 117460819
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Entry
117460819 CDS
T09629
Name
(RefSeq) integrin beta-1-like
KO
K05719
integrin beta 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03271
Virion - Rotavirus
pgeo04145
Phagosome
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
pgeo04514
Cell adhesion molecules
pgeo04530
Tight junction
pgeo04810
Regulation of actin cytoskeleton
pgeo04820
Cytoskeleton in muscle cells
pgeo05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
117460819
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117460819
04514 Cell adhesion molecules
117460819
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117460819
09144 Cellular community - eukaryotes
04510 Focal adhesion
117460819
04530 Tight junction
117460819
09142 Cell motility
04820 Cytoskeleton in muscle cells
117460819
04810 Regulation of actin cytoskeleton
117460819
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
117460819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117460819
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pgeo04147
]
117460819
04515 Cell adhesion molecules [BR:
pgeo04515
]
117460819
04090 CD molecules [BR:
pgeo04090
]
117460819
Membrane trafficking [BR:
pgeo04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
117460819
Exosome [BR:
pgeo04147
]
Exosomal proteins
Proteins found in most exosomes
117460819
Cell adhesion molecules [BR:
pgeo04515
]
Integrins
Integrin beta subunits
117460819
CD molecules [BR:
pgeo04090
]
Proteins
117460819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_integrin
Integrin_B_tail
EGF_2
I-EGF_1
PSI_integrin
EGF_TEN
EGF_Teneurin
EGF_Tenascin
Motif
Other DBs
NCBI-GeneID:
117460819
NCBI-ProteinID:
XP_033958292
LinkDB
All DBs
Position
16:complement(22870027..22874360)
Genome browser
AA seq
459 aa
AA seq
DB search
MSVKLLGLGLLLGVLCLSWADDQMCLTSASSCDECIQSGLECAWCTAPNSNIRCQTLKEL
RRAGCRKRHMYNPQGRLQVVKNDSSTEPSITTAMFIQPQELSLRLRPGVSHPFPLTITMP
TDQPITELTMETSPLPAGLNLTFSSILKGNPLVVQVNVEAARCPSEREPTQRQNRTGPWS
VLITPRGFSLSVKTEITLECQCDCTKNREKNSPGCSKRGDLVCGQCECQQPYVGQQCQRD
SDSFISPNEDFCRSGPNAPVCSGRGKCVEGFCECERRVNPKERYSGRYCECSNFDCPYQN
SSICGGRGKCECGECICDDDWTGEDCGCSMETASCMATNQNLCSNKGMCQCGKCICEPPH
TGPTCEDCPVCHGTCRQHVDCVECRAFGTGAKKDRCDQECGYLTVTLVETQDDMSQPGES
IAFCMMRSSDDCVLYYTFSRTPSGGEATVVRAKECPRGL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgaagctgctcggtctcggcctgctgctgggtgtgttgtgtctgagctgggca
gacgatcaaatgtgcctcacatctgcctccagctgtgatgagtgcatccagtctggcctg
gagtgtgcctggtgcaccgcccctaactctaacatccgctgtcagaccttgaaggagctg
cggagagccggctgtcgtaaaagacacatgtataaccctcagggcaggctgcaggttgtc
aagaacgacagcagcaccgaaccatcaattaccacagccatgttcatccagccccaggag
ctctccctccgtttgaggccaggtgtgagccaccccttccctctcactatcaccatgcct
acagaccagcctatcacagagctgaccatggagaccagccctttgccagcaggactaaac
ctcacgtttagtagcatcctgaaggggaaccctctggtcgtacaggtgaatgttgaggct
gctcggtgtcccagtgagagggagccaacccagaggcagaacaggactggaccctggtct
gtcctcatcacacccagaggcttttcactgagtgtgaagaccgagataactctggagtgt
cagtgtgactgcacaaaaaaccgtgagaaaaatagccctggctgcagtaaacgtggggat
ctggtgtgtggtcagtgtgagtgccagcagccttatgttggacaacagtgccagagagac
agcgactcatttatttctccaaatgaagacttctgtcgctctggaccgaatgcccctgtc
tgcagcggtaggggaaaatgcgtggagggattctgtgagtgtgagagacgagtcaaccca
aaagagagatacagcgggcgatactgcgagtgcagcaactttgactgtccataccaaaac
agcagtatatgcggaggccgtgggaagtgtgagtgtggagaatgcatttgtgatgatgac
tggactggtgaggactgcggctgctccatggaaactgcttcctgtatggcgacaaatcag
aatctgtgtagcaataaagggatgtgtcagtgtgggaaatgtatttgtgagccaccacac
acaggcccgacctgtgaggactgccctgtgtgtcatggcacatgtaggcagcatgtggac
tgtgtggaatgtcgggcgttcgggacgggggcgaagaaggacaggtgtgatcaagagtgt
ggctacctcactgtgacacttgtggagacacaagatgatatgtctcaaccaggagaatct
attgctttctgtatgatgaggagcagtgatgattgcgtcctctactacaccttctccagg
acgccctctggaggagaggccacggtggtgcgggctaaggaatgtcctcgaggactgtaa
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integrated database retrieval system
