Pseudochaenichthys georgianus (South Georgia icefish): 117461320
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Entry
117461320 CDS
T09629
Name
(RefSeq) integrin alpha-10-like
KO
K06586
integrin alpha 10
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
pgeo04810
Regulation of actin cytoskeleton
pgeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117461320
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117461320
09142 Cell motility
04820 Cytoskeleton in muscle cells
117461320
04810 Regulation of actin cytoskeleton
117461320
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117461320
Cell adhesion molecules [BR:
pgeo04515
]
Integrins
Integrin alpha subunits
117461320
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_1
Integrin_A_Ig_2
FG-GAP_3
VWA_2
Integrin_A_Ig_3
FG-GAP_2
vWA_SIBA-E
ITGAX-like_Ig_3
EIF3I
Motif
Other DBs
NCBI-GeneID:
117461320
NCBI-ProteinID:
XP_071061991
LinkDB
All DBs
Position
16:complement(29034435..29060994)
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AA seq
1170 aa
AA seq
DB search
MELRKYLLCMEFILLLKGLCQCFNIDVKNPRIFTGPEDALFGFSVLQHEDGGEKSMLVGA
PWDGPPNNRKGDVYKCIVGEERNSKCSKINLGETALQNVSKNLRNSHLGMTLTPDSPDGF
LACAPLWSQECGTSMFSTGICASVSDDLKPREAIAPTAQRCSTYMDIVIVLDGSNSIYPW
YEVQNFLSNILSKFHISLDQMQVGILQYGEVAVHEWSLKDYQTTQAVVEAAKNISRQEGR
ETRTAFAIQTACTEAFSAERGARDGADKVMIVVTDGESHDGEELEGALSECISRNITRYA
IAVLGHYIRRQQDPETFIKEIKSIASDPEEKYFFNVTDEAALNDIVDALGDRIFTLEGTL
GYNQSSFHMEMSQIGFSTHTLDDGILFGMVGAYDWDGGVLKEGINGRIIPSREAFESEFP
LELKNHAAYLGYTVSSVIVGDWKRLYVAGAPRFKHKGKVILFELSDDGDVNIVQALNGEQ
IGSYYGSEVCGLDIDQDGITDVLLVAAPMFLGSGNKETGRVYIYTLSGEEVFVSNGTLKS
EEKSQDARFGYALAAAPDLNHDGFTDLLVGAPLEDDHRGAIYLYHGDGIYVGHNYKQRIS
GASISPSIQYFGRSVSARLDLDGDELIDLAVGAQGSAVMLSSRSIVQINVSLSFQPHSIN
VIQKTCQRGGRESACLNATACFTTVSRSPGPHTNSFNLWVSAMLDDRKLSARALFDDSSH
RQTQLAVRVHTGQTLCYRMPFHVYDTADYIRPISFSLRFKINDTESGPVLDEGWPTTVKK
SIQFFKDCGEDDVCTTDLVLQAHMDISGTRQKPYVIRSPRRRLAVEVQLQNRLENAYNTS
LTLSYSRNLHFSSLSIREDANFKIECTALGANSHSCNVSYPVFRSQSKVNFMLEFEFSCT
SLHNRVQMKLHAKSDSVEREDTFGDNSVQLQSFVQYEPELFVISESNLNRYEVHPTRTAS
EAIGPEFYTQLKLQNLGCYSVSNVLLRLLLPSVAAGDTVFMTVTDVSYNASWVNCSVLSD
LPQLKARQRDVRSLHPEDMMPNDILNCSRSWCTEVVCEVKQLLQGQFALIRVSRRVHDDF
FRKAKYKSVKIIGAYSLAAQETNLITLGTGTVWRETVLEVLKGRAIPISLWILIGSIIGG
LLLLALIIFILWKLGFFTRKQRGEDENHED
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgtaaatacctgttgtgcatggagttcatccttctccttaaaggtttgtgc
cagtgtttcaacattgatgtaaagaatcctcgcatctttaccggtccagaggacgctctg
tttggcttctctgttttacaacatgaagacggcggagagaaatcgatgctggtcggtgct
ccgtgggacgggccgcccaacaacaggaaaggagatgtttacaaatgcatcgtgggagag
gagaggaactcaaagtgcagcaaaataaatctaggtgagactgctctccagaacgtttct
aaaaacctgaggaattctcacctgggaatgacgctcactccagactcgcctgatggattc
ctggcatgtgcccctctgtggtctcaggagtgtggtacgtctatgttcagcactggcatc
tgtgcctctgtcagcgatgacctaaagccacgagaggccatcgctcccacagcacaaagg
tgctccacatacatggacattgtgattgtgctggatggctctaacagtatctatccctgg
tacgaagtccagaactttctcagcaacatcctcagcaagttccacatcagcttggaccag
atgcaggttggtatactgcagtatggtgaggtagcagtccacgagtggtctctgaaggac
taccagaccacacaggcggttgtggaggccgcaaagaacatcagcagacaggagggaaga
gagacgcgcacggcattcgctatccagactgcctgcacagaggcgttcagtgctgagcgt
ggagcgagggatggggccgacaaggtcatgatcgtagtgacggacggagagtcacacgac
ggggaggagctggaaggcgctctgagtgagtgcatcagcagaaacatcaccagatatgcc
atcgctgttttgggtcattacatccgccgacagcaggaccctgagacgtttattaaggag
atcaagtctatcgccagcgacccagaggagaaatactttttcaatgtgaccgatgaagcc
gcgctcaatgacattgtggacgccctgggagatcgcatcttcactctggaaggcactctg
ggctataaccagagctcgttccacatggagatgtctcagatcggcttctccacacacact
ctggatgatggcatcctgtttgggatggtgggcgcctacgactgggatggtggagtgctg
aaagaaggaatcaatggacgcatcataccgtccagagaggcttttgaaagcgagtttcca
ctggagctcaaaaatcatgctgcttatttaggttacacagtatcttctgtgatagttggt
gactggaagaggctgtatgtggctggtgctcctcgattcaaacacaaaggcaaagtcatc
ttgtttgaactcagcgatgatggcgatgtcaacattgtacaagccctgaatggagaacag
attggatcttactatggcagcgaggtgtgtgggctggacatcgaccaggatggcatcact
gatgtccttctggtagctgcgccaatgttccttggctcaggaaacaaggaaactggtaga
gtgtacatctacaccctcagtggggaggaagtgtttgtttccaatggtactctgaagtca
gaagaaaagtcccaggatgccaggtttggttacgccctggcggccgctccagacctcaac
cacgacggcttcactgacctgctggtgggggccccgctggaggatgatcacagaggagcc
atttatctctaccacggagacggtatttacgtcgggcacaattacaagcagcgtatttca
ggggcatcgatttcgccctccattcagtattttggccgcagtgtgagtgctcggttggat
ttggatggagatgagctgatagacttggcagtgggagcacagggcagcgctgtgatgctc
agctctcgaagcatagtgcagatcaacgtgagtctgtccttccagccgcactccatcaac
gtcattcagaagacctgccagagggggggcagagagtcggcctgtctcaacgccaccgcc
tgcttcactaccgtctcccgctcccccggcccacacacaaacagcttcaatctgtgggtg
tcggccatgttggatgacaggaagttgtctgcgagggccctgtttgacgacagctcccac
cgtcagacccagctggcggttcgagttcacacaggacaaacgctctgctacagaatgcct
ttccatgtctatgacacagcagattacatccgtccaataagcttctcgctgcggtttaag
atcaacgatacagagagtggcccggtgctggatgaaggctggccaacaaccgtcaagaaa
tctatccagttctttaaagactgtggtgaggacgatgtgtgtacaacagacctggtgctg
caggctcatatggacatctccgggacgagacagaagccttatgtgattcgcagccctcgt
aggcgtctggcggtggaggtgcagcttcagaacagactggaaaacgcctacaacaccagc
ctgacgctgagctattcccgcaacctgcacttctccagcctcagcatcagggaggatgcc
aactttaagattgagtgtacagcacttggagccaacagccactcgtgtaatgtcagctat
ccagtatttcgctcccagtcaaaagttaacttcatgttggagtttgagttcagctgcacc
tctctgcacaaccgagtgcagatgaagcttcatgctaaaagtgacagtgtggagagagag
gacacttttggggacaacagtgttcagctgcagagtttcgttcagtacgaaccagagttg
tttgttatcagtgaatctaatttgaaccgatacgaggtccaccccactcgcacagcgtca
gaggctattggaccagagttttatacacaactcaagctgcagaacctcggatgttactct
gtgagtaatgtgttgctgaggctgcttctgccctcagtagctgcaggagacacagtcttc
atgaccgtcactgatgtttcatacaacgcctcgtgggtgaactgcagcgtgctgagtgat
ctgccccagctgaaggccagacagagagacgtacgctcccttcacccagaagacatgatg
cctaacgacatactgaactgcagcaggtcatggtgcactgaggttgtgtgtgaagtaaag
cagcttttacaagggcagttcgctctcattcgtgtcagccgcagagttcatgatgacttt
ttcagaaaagcaaaatataagtcagtgaagataataggggcctacagcctcgcagcccag
gagactaacctcattactctgggcacaggaacagtctggagggagacggtattggaggtg
cttaagggccgagctattcctatctcgctgtggattctgatcggtagcatcattggaggt
ttgctgctactggccctaatcattttcatactatggaagctgggattcttcacacgcaaa
cagagaggagaagatgagaaccatgaagactga
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