Pseudochaenichthys georgianus (South Georgia icefish): 117461339
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Entry
117461339 CDS
T09629
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117461339 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117461339 (exosc1)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117461339 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
117461339 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
117461339
NCBI-ProteinID:
XP_033959085
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All DBs
Position
1:complement(17809226..17814996)
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AA seq
194 aa
AA seq
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MSPMKLCVPGDKLCSTEDCIPGTGIYLRHGCIYSSLTGYVLKKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPQTHSKE
FRKVARVQPEFLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgacaagctgtgcagcacagaagactgtatt
cccggcacaggaatttatctgcgacacggctgcatttactcctcactaacaggctatgtg
cttaagaaaaatgaaggagaggagttaccagtgatctcggttgtaagggaaacagagaca
caactactaccagatgtaggcgctatagtcacctgtaaggtgaccagcattaaccccagg
ttcgcaaaagtccacatcctttatgtgggctccacaccgctgaaggaccgcttcagagga
actatcaggaaagaagatgtgcgtgccacagagaaagacaaggtggagacgtacaaaagc
ttcagacctggcgacatcgtcttggccaaagttatttctctcggagacgtgcagtcaaac
tacctgttgacaacagcagagaacgagctgggggtggtggtggcacacagtgaagcaggt
gcccagatggttcccatcagctggtgtgagatgcagtgcccgcagacgcacagcaaagaa
ttccgcaaagtggcgcgagtgcagccggagtttcttcaggcatga
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