Pseudochaenichthys georgianus (South Georgia icefish): 117461386
Help
Entry
117461386 CDS
T09629
Symbol
col28a1b
Name
(RefSeq) collagen, type XXVIII, alpha 1b
KO
K23619
collagen type XXVIII alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pgeo01002
]
117461386 (col28a1b)
Peptidases and inhibitors [BR:
pgeo01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
117461386 (col28a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
VWA_4
Motif
Other DBs
NCBI-GeneID:
117461386
NCBI-ProteinID:
XP_033959106
LinkDB
All DBs
Position
16:31264767..31280858
Genome browser
AA seq
1194 aa
AA seq
DB search
MKMLLRGNLRSGLGICFLLLALSHEATGQRRRKGRRNNNRLRDDGGNGLTCSLEVAFILD
SSESAKIYLFEKQKAFVLSFSTRLSMTQIDGWTLKMRMAALQYSSFVSMEHRFSAWRDLD
SFHNQVNAMNYIGHGTYTTYAITNVSQLLVEETPADSVRVAVLMTDGVDHPRSPDVIAAA
AEAKGHGIKFFAVGLSDIGQQSKNNAKLRAIASTPAQQFVQSLLDPQLEEKLIKEMGALA
YEGCPKAQVCTCERGERGLQGSQGRKGDPGYTGPPGVKGARGESGSNGRPGGDGPEGHPG
YKGNKGGTGDCGTPGEKGDIGPEGPAGQRGTKGEQGVLGFTGDTGPEGAAGPKGDRGPNG
AAGSPGDIGIGFPGAKGEQGLQGRSGPSGPVGIGEPGLPGPPGPAAVRGIPGPTGEGLPG
PKGDRGYEGPRGNRGLAGIGVKGDKGGYGPYGVQGPVGAPGLGNQGEKGDQGPVGPAGPR
GAQGIGITGTKGNQGLPGEPGLTGERGVGQPGPKGDPGSDGPPGIPSEPAEDGAPGQKGD
VGLPGPRGPDGAPGKGTPGGKGDRGDRASRGLPGAVGLVGPMGSKGEPGKMGPPGATGPP
GRGVAGEKGEPGLRGPAGAVGETGRGFPGPKGDKGPAGPAGIPGLKGDVYPGPPGLLGPL
GLTGETGSDGVGLPGPKGDRGLSGPPGPTGPPGITLIGPKGSVGQRGPPGAQGLPGEGIQ
GEKGETGFHGIAGPRGPPGQGLQGDKGDRGFRGEKGTRGDGGGPGEHGVSGPMGRTGQKG
DPGLTREDIIQIVRSICSCGVTCRKTPLELIFVIDSSESMGPDNFNLVKDFVNSLIDRAS
VSRDTTRVGVVVYSHINMVVVSLRQEATRDEIKSAVRSMTYLGEGTFTGSAIKQANQVFK
GARAGVRKMAIIITDGQADKRDKVSLKSAVSEAHGSDIEMFVIGLVNESDPLYEEFKKEI
NLMASDPDSNHVYLINEFKTLHALERELLSQICEDGWERHLFSSVPSSRLSPGIPDLSDN
VREPPYRTDTDTPTFTGDFRRVQIVPGLPAPQPDREPITPQRPKTDDRSSSQIHRWPFFD
MDPFRPVTESFPQFDMKDPKRVVMTGVIGPAGPTLMTPPRFTILPTTPLPLSETNIPAEG
CDQALDPGPCRDYVVKWYYDPIANSCAQFWFGGCSGNRNQFETEKSCRETCAKV
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgttgctaaggggaaacctgaggagtggattggggatttgctttctgttgttg
gctctctcacacgaggccacaggacagagaagaaggaaaggacgcaggaataacaacaga
ctgcgtgacgatggaggaaatggtctgacgtgttcactggaggtagctttcattctggac
agctcggagagtgcaaagatatacctgtttgagaagcagaaagctttcgtgttgagcttc
agcactcgcctctccatgactcaaatagacggctggacgctgaagatgagaatggcagct
cttcaatacagcagctttgtgtccatggagcaccggttctcagcctggagagacctggat
tcatttcacaatcaagtaaacgccatgaactacatcggccacggcacctacaccacctac
gccatcaccaacgtctcgcagctgctggtggaggagacgccggccgacagcgtcagagtt
gcagtgctgatgactgacggtgtggaccacccccggagccctgatgtgatcgcagctgca
gcagaggccaaaggtcacggcataaagttctttgctgtgggtctatcagacatcggccag
cagagtaagaataacgccaagctccgggccatcgccagcacacctgctcagcagtttgtc
caaagtcttctcgatcctcagctggaggagaagctgatcaaggagatgggtgcacttgcc
tatgaagggtgtccaaaggctcaagtgtgtacgtgtgaaagaggagaaaggggccttcaa
ggaagtcaaggtagaaaaggggacccaggctacacagggccacctggtgtaaaaggagcg
aggggtgagtctggctccaacggtcgacctggaggtgatggtccagagggccatccaggt
tataagggcaacaagggggggacaggagactgtggcactcctggggagaagggtgacatt
ggacctgagggacctgcaggccagcgaggaacaaagggagaacagggagtactaggattt
acaggagacacaggccctgaaggagcagcaggacccaaaggcgaccgagggcccaacggt
gctgcaggatcaccgggggacattggtattggatttcctggagccaagggtgaacaaggc
cttcagggaagatcaggtccttcaggtcctgttgggataggagaaccaggactacctggt
ccaccaggaccagccgcagtgcgaggaatcccaggaccaacgggcgaggggcttccaggg
ccgaagggggatcgaggatatgagggtcccagaggaaatcgtgggcttgctggcattggg
gttaaaggcgacaagggaggttacgggccgtatggggttcaaggtccagttggtgctcct
ggtttaggaaatcaaggagaaaagggggatcaaggcccagttggacctgcaggccccaga
ggagctcaaggtatcggaataacaggaacaaaggggaatcagggactcccaggtgagcct
ggactgacaggtgaacgaggtgttggacaaccaggacccaaaggtgacccggggtcagat
gggccaccaggtataccaagtgagccagcagaggatggagccccaggacaaaagggggac
gttgggttaccggggcccaggggacctgacggggctcctggtaaaggcactcctggaggg
aagggggacagaggggacagagcgagcagaggactgccaggtgcagtcggtcttgtgggg
ccaatggggtcaaagggggaacccggaaagatggggccaccgggggcaacaggaccacca
gggaggggtgtagctggagagaagggagaaccgggactacgtggtccagctggagctgtg
ggagagacgggaaggggtttccctggacccaagggggacaaagggcctgcagggcctgct
gggatacctggacttaaaggtgacgtttaccccggccctccaggacttctggggcccctt
ggtctgacaggagagaccggatcagatggcgtaggtctacctggaccaaagggagataga
ggcttgtctggacctcctggacccactggaccaccaggaattaccctaattggtcccaag
ggttcagttggccaaaggggaccgcctggtgcacaggggttacctggagagggcatccaa
ggagaaaagggggagactggatttcatgggatcgctggacccagaggtcctcctggacaa
ggtctgcagggggacaagggggatcgagggttcagaggtgagaaaggcaccaggggagac
ggaggaggacctggagagcacggagtcagtggacctatgggtagaactggacaaaaagga
gatcctggacttacaagggaagatatcatacaaatcgtgagatccatatgcagttgtgga
gttacatgccgcaaaacccccttggagctgatttttgtgatcgacagctctgagagtatg
ggccctgacaacttcaacctggtcaaagactttgtaaactccctaatcgaccgagcctct
gtcagccgggacaccacacgggtgggtgttgtcgtctacagccacatcaacatggtggtg
gtcagcctcagacaggaagccactcgtgatgagatcaagtctgcagtgcgctccatgacc
tacctgggtgaggggacgttcacaggtagtgccattaaacaggccaaccaggtgttcaag
ggtgcacgggcaggtgtgaggaagatggccatcatcatcaccgacgggcaggccgataaa
agagacaaagtcagtctgaagagtgcggtatcagaagctcatgggagtgacatcgagatg
tttgtgatcggcttggtgaatgagagcgaccctctgtatgaggagttcaaaaaggagatc
aatctcatggcctctgaccccgacagcaaccacgtgtacctgatcaatgaattcaaaaca
cttcatgctctggagagagaactgctgagtcagatctgtgaggacggctgggaaaggcat
ttgttcagctctgtcccgagttccagactgtctccaggaattcccgatttatccgataat
gttcgtgaacctccatacaggacggatactgacacgcccaccttcacaggagacttcagg
agggttcagatagtgcccggccttccagcgccacaacccgacagagaacccatcactcca
cagagaccaaagacagacgacagaagctcctcacagattcatagatggccattctttgac
atggatcctttcagacccgtcacagagtccttcccacagtttgacatgaaggaccccaaa
cgtgtggtgatgacgggagttatcgggccggcaggtccaactctgatgacaccgccccgg
tttactatccttccaactactccactgccgctgtctgaaaccaacatacctgctgagggc
tgcgaccaggcgctagatccagggccgtgccgggactacgtggtgaagtggtactacgac
cccatagctaattcctgcgctcaattctggtttggaggctgttcaggaaacagaaaccag
tttgagactgagaagagctgcagagaaacctgcgccaaagtctaa
DBGET
integrated database retrieval system
